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Remove the bad test
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test/sdesystem.jl

Lines changed: 1 addition & 80 deletions
Original file line numberDiff line numberDiff line change
@@ -460,7 +460,7 @@ fdif!(du, u0, p, t)
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]
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sys1 = SDESystem(eqs_short, noiseeqs, t, [x, y, z], [σ, ρ, β], name = :sys1)
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sys2 = SDESystem(eqs_short, noiseeqs, t, [x, y, z], [σ, ρ, β], name = :sys1)
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@test_throws ArgumentError SDESystem([sys2.y ~ sys1.z], t, [], [], [],
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@test_throws ArgumentError SDESystem([sys2.y ~ sys1.z], [], t, [], [],
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systems = [sys1, sys2], name = :foo)
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end
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@@ -584,82 +584,3 @@ end
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@test μμmod atol=2σ
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@test σ > σmod
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end
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@variables t
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D = Differential(t)
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sts = @variables x(t) y(t) z(t)
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ps = @parameters σ ρ
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@brownian β η
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s = 0.001
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β *= s
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η *= s
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eqs = [D(x) ~ σ * (y - x) + x * β,
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D(y) ~ x *- z) - y + y * β + x * η,
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D(z) ~ x * y - β * z + (x * z) * β]
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@named sys1 = System(eqs, t)
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sys1 = structural_simplify(sys1)
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drift_eqs = [D(x) ~ σ * (y - x),
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D(y) ~ x *- z) - y,
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D(z) ~ x * y]
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diffusion_eqs = s * [x 0
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y x
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(x * z)-z 0]
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sys2 = SDESystem(drift_eqs, diffusion_eqs, t, sts, ps, name = :sys1)
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@test sys1 == sys2
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prob = SDEProblem(sys1, sts .=> [1.0, 0.0, 0.0],
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(0.0, 100.0), ps .=> (10.0, 26.0))
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@test_nowarn solve(prob, LambaEulerHeun(), seed = 1)
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@variables t
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D = Differential(t)
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sts = @variables S(t) E(t) I(t) R(t) D1(t) D2(t) β(t) logβ(t)
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ps = @parameters σ ρ γ λ N
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@brownian α
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eqs = Equation[
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β ~ logβ #exp(logβ)
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D(logβ) ~ sqrt(0.2) * α
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D(S) ~ -β * S * I / N
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E ~ N - (S + I + R + D1 + D2)
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D(I) ~ σ * E - γ * I
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D(R) ~ (1 - ρ) * γ * I
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D(D1) ~ ρ * γ * I - λ * D1
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D(D2) ~ λ * D1]
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@named mecha_bayes = System(eqs, t)
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mecha_bayes = structural_simplify(mecha_bayes)
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dE = 0.4
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dI = 2.0
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Rh = 3.0
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NN = 1
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using Random
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Random.seed!(1)
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E0 = rand(Uniform(0, 0.02NN))
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I0 = rand(Uniform(0, 0.02NN))
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R0 = rand(Uniform(0, 0.02NN))
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D10 = rand(Uniform(0, 0.02NN))
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D20 = rand(Uniform(0, 0.02NN))
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S0 = 1 - (E0 + I0 + R0 + D10 + D20)
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u0 = [
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S => S0
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E => E0
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I => I0
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R => R0
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D1 => D10
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D2 => D20
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β => 0.0
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logβ => log(rand(Gamma(1, dI / Rh)))
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]
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p = [N => NN,
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σ => rand(Gamma(100, 100dE)),
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ρ => rand(Beta(1, 99)),
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γ => rand(Gamma(100, 100dI)),
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λ => rand(Gamma(10, 10*25))]
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prob = SDEProblem(mecha_bayes, u0,
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(0.0, 10.0), p)
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@test_nowarn sol = solve(prob, SRIW1(), reltol=1e-3, abstol=1e-3, seed = 1);

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