Merge remote-tracking branch 'origin/master' into MTK

Author: vyudu

.github/workflows/Documentation.yml

@@ -20,7 +20,7 @@ jobs:
       - uses: actions/checkout@v4
       - uses: julia-actions/setup-julia@latest
         with:
-          version: '1'
+          version: 'lts'
       - run: sudo apt-get update && sudo apt-get install -y xorg-dev mesa-utils xvfb libgl1 freeglut3-dev libxrandr-dev libxinerama-dev libxcursor-dev libxi-dev libxext-dev
       - name: Install dependencies
         run: DISPLAY=:0 xvfb-run -s '-screen 0 1024x768x24' julia --project=docs/ -e 'using Pkg; Pkg.develop(PackageSpec(path=pwd())); Pkg.instantiate()'
@@ -31,8 +31,8 @@ jobs:
           JULIA_DEBUG: "Documenter"
         run: DISPLAY=:0 xvfb-run -s '-screen 0 1024x768x24' julia --project=docs/ --code-coverage=user docs/make.jl
       - uses: julia-actions/julia-processcoverage@v1
-      - uses: codecov/codecov-action@v4
+      - uses: codecov/codecov-action@v5
         with:
-          file: lcov.info
+          files: lcov.info
           token: ${{ secrets.CODECOV_TOKEN }}
           fail_ci_if_error: true

.github/workflows/Downstream.yml

@@ -68,8 +68,8 @@ jobs:
             exit(0)  # Exit immediately, as a success
           end
       - uses: julia-actions/julia-processcoverage@v1
-      - uses: codecov/codecov-action@v4
+      - uses: codecov/codecov-action@v5
         with:
-          file: lcov.info
+          files: lcov.info
           token: ${{ secrets.CODECOV_TOKEN }}
-          fail_ci_if_error: true
+          fail_ci_if_error: false

Project.toml

@@ -1,7 +1,7 @@
 name = "ModelingToolkit"
 uuid = "961ee093-0014-501f-94e3-6117800e7a78"
 authors = ["Yingbo Ma <[email protected]>", "Chris Rackauckas <[email protected]> and contributors"]
-version = "9.48.0"
+version = "9.53.0"
 
 [deps]
 AbstractTrees = "1520ce14-60c1-5f80-bbc7-55ef81b5835c"
@@ -21,6 +21,7 @@ Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f"
 DocStringExtensions = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae"
 DomainSets = "5b8099bc-c8ec-5219-889f-1d9e522a28bf"
 DynamicQuantities = "06fc5a27-2a28-4c7c-a15d-362465fb6821"
+EnumX = "4e289a0a-7415-4d19-859d-a7e5c4648b56"
 ExprTools = "e2ba6199-217a-4e67-a87a-7c52f15ade04"
 Expronicon = "6b7a57c9-7cc1-4fdf-b7f5-e857abae3636"
 FindFirstFunctions = "64ca27bc-2ba2-4a57-88aa-44e436879224"
@@ -94,6 +95,7 @@ Distributions = "0.23, 0.24, 0.25"
 DocStringExtensions = "0.7, 0.8, 0.9"
 DomainSets = "0.6, 0.7"
 DynamicQuantities = "^0.11.2, 0.12, 0.13, 1"
+EnumX = "1.0.4"
 ExprTools = "0.1.10"
 Expronicon = "0.8"
 FindFirstFunctions = "1"
@@ -111,7 +113,7 @@ Libdl = "1"
 LinearAlgebra = "1"
 MLStyle = "0.4.17"
 NaNMath = "0.3, 1"
-NonlinearSolve = "3.14"
+NonlinearSolve = "3.14, 4"
 OffsetArrays = "1"
 OrderedCollections = "1"
 OrdinaryDiffEq = "6.82.0"
@@ -125,13 +127,13 @@ SciMLBase = "2.57.1"
 SciMLStructures = "1.0"
 Serialization = "1"
 Setfield = "0.7, 0.8, 1"
-SimpleNonlinearSolve = "0.1.0, 1"
+SimpleNonlinearSolve = "0.1.0, 1, 2"
 SparseArrays = "1"
 SpecialFunctions = "0.7, 0.8, 0.9, 0.10, 1.0, 2"
 StaticArrays = "0.10, 0.11, 0.12, 1.0"
-SymbolicIndexingInterface = "0.3.31"
+SymbolicIndexingInterface = "0.3.35"
 SymbolicUtils = "3.7"
-Symbolics = "6.15.2"
+Symbolics = "6.19"
 URIs = "1"
 UnPack = "0.1, 1.0"
 Unitful = "1.1"

docs/Project.toml

@@ -30,10 +30,10 @@ Distributions = "0.25"
 Documenter = "1"
 DynamicQuantities = "^0.11.2, 0.12, 1"
 ModelingToolkit = "8.33, 9"
-NonlinearSolve = "3"
+NonlinearSolve = "3, 4"
 Optim = "1.7"
-Optimization = "3.9"
-OptimizationOptimJL = "0.1"
+Optimization = "3.9, 4"
+OptimizationOptimJL = "0.1, 0.4"
 OrdinaryDiffEq = "6.31"
 Plots = "1.36"
 SciMLStructures = "1.1"

docs/src/basics/FAQ.md

@@ -82,6 +82,16 @@ parameter_index(sys, sym)
 Note that while the variable index will be an integer, the parameter index is a struct of
 type `ParameterIndex` whose internals should not be relied upon.
 
+## Can I index with strings?
+
+Strings are not considered symbolic variables, and thus cannot directly be used for symbolic
+indexing. However, ModelingToolkit does provide a method to parse the string representation of
+a variable, given the system in which that variable exists.
+
+```@docs
+ModelingToolkit.parse_variable
+```
+
 ## Transforming value maps to arrays
 
 ModelingToolkit.jl allows (and recommends) input maps like `[x => 2.0, y => 3.0]`

docs/src/basics/MTKLanguage.md

@@ -147,9 +147,9 @@ julia> ModelingToolkit.getdefault(model_c1.v)
 2.0
 ```
 
-#### `@extend` begin block
+#### `@extend` statement
 
-Partial systems can be extended in a higher system in two ways:
+One or more partial systems can be extended in a higher system with `@extend` statements. This can be done in two ways:
 
   - `@extend PartialSystem(var1 = value1)`
 
@@ -313,7 +313,8 @@ end
   - `:components`: The list of sub-components in the form of [[name, sub_component_name],...].
   - `:constants`: Dictionary of constants mapped to its metadata.
   - `:defaults`: Dictionary of variables and default values specified in the `@defaults`.
-  - `:extend`: The list of extended unknowns, name given to the base system, and name of the base system.
+  - `:extend`: The list of extended unknowns, parameters and components, name given to the base system, and name of the base system.
+    When multiple extend statements are present, latter two are returned as lists.
   - `:structural_parameters`: Dictionary of structural parameters mapped to their metadata.
   - `:parameters`: Dictionary of symbolic parameters mapped to their metadata. For
     parameter arrays, length is added to the metadata as `:size`.

docs/src/basics/Variable_metadata.md

@@ -86,6 +86,44 @@ hasbounds(u)
 getbounds(u)
 ```
 
+Bounds can also be specified for array variables. A scalar array bound is applied to each
+element of the array. A bound may also be specified as an array, in which case the size of
+the array must match the size of the symbolic variable.
+
+```@example metadata
+@variables x[1:2, 1:2] [bounds = (-1, 1)]
+hasbounds(x)
+```
+
+```@example metadata
+getbounds(x)
+```
+
+```@example metadata
+getbounds(x[1, 1])
+```
+
+```@example metadata
+getbounds(x[1:2, 1])
+```
+
+```@example metadata
+@variables x[1:2] [bounds = (-Inf, [1.0, Inf])]
+hasbounds(x)
+```
+
+```@example metadata
+getbounds(x)
+```
+
+```@example metadata
+getbounds(x[2])
+```
+
+```@example metadata
+hasbounds(x[2])
+```
+
 ## Guess
 
 Specify an initial guess for custom initial conditions of an `ODESystem`.