forgot to add the pt file

Author: yonatanwesen

src/pseudotransient.jl

@@ -0,0 +1,180 @@
+"""
+PseudoTransient{nothing, AutoForwardDiff{0, Bool}, Nothing, typeof(NonlinearSolve.DEFAULT_PRECS), Float64}(AutoForwardDiff{0, Bool}(true), 
+nothing, NonlinearSolve.DEFAULT_PRECS, 0.001)
+
+An implementation of PseudoTransient method that is used to solve steady state problems in an accelerated manner. It uses an adaptive time-stepping to
+integrate an initial value of nonlinear problem until sufficient accuracy in the desired steady-state is achieved to switch over to Newton's method and 
+gain a rapid convergence. This implementation specifically uses "switched evolution relaxation" SER method. For detail information about the time-stepping and algorithm,
+please see the paper: [Coffey, Todd S. and Kelley, C. T. and Keyes, David E. (2003), Pseudotransient Continuation and Differential-Algebraic Equations, 
+SIAM Journal on Scientific Computing,25, 553-569.](https://doi.org/10.1137/S106482750241044X)
+
+### Keyword Arguments
+
+- `alpha_initial` : the initial pseudo time step. it defaults to 1e-3. If it is small, you are going to need more iterations to converge.
+
+
+
+
+"""
+@concrete struct PseudoTransient{CJ, AD} <: AbstractNewtonAlgorithm{CJ, AD}
+    ad::AD
+    linsolve
+    precs
+    alpha_initial
+end
+
+#concrete_jac(::PseudoTransient{CJ}) where {CJ} = CJ
+function set_ad(alg::PseudoTransient{CJ}, ad) where {CJ}
+    return PseudoTransient{CJ}(ad, alg.linsolve, alg.precs, alg.alpha_initial)
+end
+
+function PseudoTransient(; concrete_jac = nothing, linsolve = nothing,
+    precs = DEFAULT_PRECS, alpha_initial = 1e-3, adkwargs...)
+    ad = default_adargs_to_adtype(; adkwargs...)
+    return PseudoTransient{_unwrap_val(concrete_jac)}(ad, linsolve, precs, alpha_initial)
+end
+
+@concrete mutable struct PseudoTransientCache{iip}
+    f
+    alg
+    u
+    fu1
+    fu2
+    du
+    p
+    alpha
+    res_norm
+    uf
+    linsolve
+    J
+    jac_cache
+    force_stop
+    maxiters::Int
+    internalnorm
+    retcode::ReturnCode.T
+    abstol
+    prob
+    stats::NLStats
+end
+
+isinplace(::PseudoTransientCache{iip}) where {iip} = iip
+
+function SciMLBase.__init(prob::NonlinearProblem{uType, iip}, alg_::PseudoTransient,
+    args...;
+    alias_u0 = false, maxiters = 1000, abstol = 1e-6, internalnorm = DEFAULT_NORM,
+    linsolve_kwargs = (;),
+    kwargs...) where {uType, iip}
+    alg = get_concrete_algorithm(alg_, prob)
+
+    @unpack f, u0, p = prob
+    u = alias_u0 ? u0 : deepcopy(u0)
+    if iip
+        fu1 = f.resid_prototype === nothing ? zero(u) : f.resid_prototype
+        f(fu1, u, p)
+    else
+        fu1 = _mutable(f(u, p))
+    end
+    uf, linsolve, J, fu2, jac_cache, du = jacobian_caches(alg,
+        f,
+        u,
+        p,
+        Val(iip);
+        linsolve_kwargs)
+    alpha = convert(eltype(u), alg.alpha_initial)
+    res_norm = internalnorm(fu1)
+
+    return PseudoTransientCache{iip}(f, alg, u, fu1, fu2, du, p, alpha, res_norm, uf,
+        linsolve, J,
+        jac_cache, false, maxiters, internalnorm, ReturnCode.Default, abstol, prob,
+        NLStats(1, 0, 0, 0, 0))
+end
+
+function perform_step!(cache::PseudoTransientCache{true})
+    @unpack u, fu1, f, p, alg, J, linsolve, du, alpha = cache
+    jacobian!!(J, cache)
+    J_new = J - (1 / alpha) * I
+
+    # u = u - J \ fu
+    linres = dolinsolve(alg.precs, linsolve; A = J_new, b = _vec(fu1), linu = _vec(du),
+        p, reltol = cache.abstol)
+    cache.linsolve = linres.cache
+    @. u = u - du
+    f(fu1, u, p)
+
+    new_norm = cache.internalnorm(fu1)
+    cache.alpha *= cache.res_norm / new_norm
+    cache.res_norm = new_norm
+
+    new_norm < cache.abstol && (cache.force_stop = true)
+    cache.stats.nf += 1
+    cache.stats.njacs += 1
+    cache.stats.nsolve += 1
+    cache.stats.nfactors += 1
+    return nothing
+end
+
+function perform_step!(cache::PseudoTransientCache{false})
+    @unpack u, fu1, f, p, alg, linsolve, alpha = cache
+
+    cache.J = jacobian!!(cache.J, cache)
+    # u = u - J \ fu
+    if linsolve === nothing
+        cache.du = fu1 / (cache.J - (1 / alpha) * I)
+    else
+        linres = dolinsolve(alg.precs, linsolve; A = cache.J - (1 / alpha) * I,
+            b = _vec(fu1),
+            linu = _vec(cache.du), p, reltol = cache.abstol)
+        cache.linsolve = linres.cache
+    end
+    cache.u = @. u - cache.du  # `u` might not support mutation
+    cache.fu1 = f(cache.u, p)
+
+    new_norm = cache.internalnorm(fu1)
+    cache.alpha *= cache.res_norm / new_norm
+    cache.res_norm = new_norm
+    new_norm < cache.abstol && (cache.force_stop = true)
+    cache.stats.nf += 1
+    cache.stats.njacs += 1
+    cache.stats.nsolve += 1
+    cache.stats.nfactors += 1
+    return nothing
+end
+
+function SciMLBase.solve!(cache::PseudoTransientCache)
+    while !cache.force_stop && cache.stats.nsteps < cache.maxiters
+        perform_step!(cache)
+        cache.stats.nsteps += 1
+    end
+
+    if cache.stats.nsteps == cache.maxiters
+        cache.retcode = ReturnCode.MaxIters
+    else
+        cache.retcode = ReturnCode.Success
+    end
+
+    return SciMLBase.build_solution(cache.prob, cache.alg, cache.u, cache.fu1;
+        cache.retcode, cache.stats)
+end
+
+function SciMLBase.reinit!(cache::PseudoTransientCache{iip}, u0 = cache.u; p = cache.p,
+    alpha_new,
+    abstol = cache.abstol, maxiters = cache.maxiters) where {iip}
+    cache.p = p
+    if iip
+        recursivecopy!(cache.u, u0)
+        cache.f(cache.fu1, cache.u, p)
+    else
+        # don't have alias_u0 but cache.u is never mutated for OOP problems so it doesn't matter
+        cache.u = u0
+        cache.fu1 = cache.f(cache.u, p)
+    end
+    cache.alpha = convert(eltype(cache.u), alpha_new)
+    cache.res_norm = cache.internalnorm(cache.fu1)
+    cache.abstol = abstol
+    cache.maxiters = maxiters
+    cache.stats.nf = 1
+    cache.stats.nsteps = 1
+    cache.force_stop = false
+    cache.retcode = ReturnCode.Default
+    return cache
+end