Clean up test files and package changes

Author: ChrisRackauckas

Project.toml

@@ -12,6 +12,9 @@ LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 Logging = "56ddb016-857b-54e1-b83d-db4d58db5568"
 LoggingExtras = "e6f89c97-d47a-5376-807f-9c37f3926c36"
 OptimizationBase = "bca83a33-5cc9-4baa-983d-23429ab6bcbb"
+OptimizationMOI = "fd9f6733-72f4-499f-8506-86b2bdd0dea1"
+OptimizationOptimJL = "36348300-93cb-4f02-beb5-3c3902f8871e"
+OptimizationOptimisers = "42dfb2eb-d2b4-4451-abcd-913932933ac1"
 Printf = "de0858da-6303-5e67-8744-51eddeeeb8d7"
 ProgressLogging = "33c8b6b6-d38a-422a-b730-caa89a2f386c"
 Reexport = "189a3867-3050-52da-a836-e630ba90ab69"
@@ -44,6 +47,7 @@ MLUtils = "0.4"
 ModelingToolkit = "10"
 Mooncake = "0.4.138"
 Optim = ">= 1.4.1"
+Optimisers = ">= 0.2.5"
 OptimizationBase = "2"
 OptimizationMOI = "0.5"
 OptimizationOptimJL = "0.4"
@@ -52,7 +56,7 @@ OrdinaryDiffEqTsit5 = "1"
 Pkg = "1"
 Printf = "1.10"
 ProgressLogging = "0.1"
-Random = "1.10" 
+Random = "1.10"
 Reexport = "1.2"
 ReverseDiff = "1"
 SafeTestsets = "0.1"
@@ -64,7 +68,6 @@ Symbolics = "6"
 TerminalLoggers = "0.1"
 Test = "1.10"
 Tracker = "0.2"
-Optimisers = ">= 0.2.5"
 Zygote = "0.6, 0.7"
 julia = "1.10"
 
@@ -83,6 +86,7 @@ IterTools = "c8e1da08-722c-5040-9ed9-7db0dc04731e"
 Lux = "b2108857-7c20-44ae-9111-449ecde12c47"
 MLUtils = "f1d291b0-491e-4a28-83b9-f70985020b54"
 ModelingToolkit = "961ee093-0014-501f-94e3-6117800e7a78"
+Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6"
 Optim = "429524aa-4258-5aef-a3af-852621145aeb"
 Optimisers = "3bd65402-5787-11e9-1adc-39752487f4e2"
 OptimizationMOI = "fd9f6733-72f4-499f-8506-86b2bdd0dea1"
@@ -100,10 +104,6 @@ Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7"
 Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
 Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c"
 Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f"
-Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6"
 
 [targets]
-test = ["Aqua", "BenchmarkTools", "Boltz", "ComponentArrays", "DiffEqFlux", "Enzyme", "FiniteDiff", "Flux", "ForwardDiff",
-    "Ipopt", "IterTools", "Lux", "MLUtils", "ModelingToolkit", "Optim", "OptimizationMOI", "OptimizationOptimJL", "OptimizationOptimisers", 
-    "OrdinaryDiffEqTsit5", "Pkg", "Random", "ReverseDiff", "SafeTestsets", "SciMLSensitivity", "SparseArrays", "SparseDiffTools",
-    "Symbolics",  "Test", "Tracker", "Zygote", "Mooncake"]
+test = ["Aqua", "BenchmarkTools", "Boltz", "ComponentArrays", "DiffEqFlux", "Enzyme", "FiniteDiff", "Flux", "ForwardDiff", "Ipopt", "IterTools", "Lux", "MLUtils", "ModelingToolkit", "Optim", "OptimizationMOI", "OptimizationOptimJL", "OptimizationOptimisers", "OrdinaryDiffEqTsit5", "Pkg", "Random", "ReverseDiff", "SafeTestsets", "SciMLSensitivity", "SparseArrays", "SparseDiffTools", "Symbolics", "Test", "Tracker", "Zygote", "Mooncake"]

test_sophia_fix.jl

@@ -0,0 +1,26 @@
+using Optimization, ComponentArrays, Enzyme
+
+# Test function - simple quadratic
+function rosenbrock(x, p)
+    return (1 - x.a)^2 + 100 * (x.b - x.a^2)^2
+end
+
+# Initial parameter as ComponentVector
+x0 = ComponentVector(a = 0.0, b = 0.0)
+
+# Create optimization function with Enzyme autodiff
+optf = OptimizationFunction(rosenbrock, AutoEnzyme())
+
+# Create optimization problem
+prob = OptimizationProblem(optf, x0)
+
+# Test that Sophia optimizer works without shadow generation errors
+try
+    sol = solve(prob, Optimization.Sophia(η=0.01, k=2), maxiters=5)
+    println("✓ Sophia optimizer with ComponentArrays succeeded!")
+    println("Solution: ", sol.u)
+    println("Final objective: ", sol.objective)
+catch e
+    println("✗ Error: ", e)
+    rethrow(e)
+end