Skip to content

Parameter Optimization of a MethodOfLines Discretized PDE with Newest ModelingToolkit VersionΒ #851

@leeandrepc

Description

@leeandrepc

I've been trying to update a model that used to work (I think pre-ModelingToolkit v9.xx.x) to the most recent version of ModelingToolkit v9.49.0. However, when I try to do the parameter optimization part of model it errors and I cannot figure out how to resolve it.

Minimal Reproducible Example πŸ‘‡

using ModelingToolkit, MethodOfLines, DifferentialEquations, Plots, Statistics
import ModelingToolkit: Interval
using SciMLStructures: replace!, Tunable, replace

gauss_ic(x) =  5.0 * exp(-1/2* (x - 0.5)^2/0.5^2)

@parameters t, x, A
@variables c(..)#, Ξ¦α΅’(..), Ξ¦(..)
@register_symbolic gauss_ic(x)
Dt = Differential(t)
Dx = Differential(x)
Dxx = Differential(x)^2

eqs = [Dt(c(t, x)) ~ A * Dxx(c(t, x))]

domain = [t ∈ Interval(0.0, 1.0), 
    x ∈ Interval(0.0, 1.0)]

bcs = [ c(0., x) ~ gauss_ic(x),  
    Dx(c(t, 0.)) ~ 0.0, 
    Dx(c(t, 1.)) ~ 0.0 ]

@named pdesys = PDESystem(eqs, bcs, domain, [t, x], [c(t, x)], [A]; defaults =  Dict(A => 0.01))
dx = 0.01
discretization = MOLFiniteDifference([x => dx], t)
prob = discretize(pdesys, discretization)
sol = DifferentialEquations.solve(prob, Tsit5())
data = sol.u[c(t, x)]
t_ = 0:1/(size(data)[1]-1):1
x_ = 0:1/(size(data)[2]-1):1

function mse_loss(x, p)
    prob_ = p
    replace!(Tunable(), prob_.p, x)
    newsol = DifferentialEquations.solve(prob_, Tsit5())
    return mean(abs2.(newsol(t_, x_)[1] .- data))
end

using Optimization, OptimizationOptimJL, OptimizationOptimisers
optfunc = Optimization.OptimizationFunction(mse_loss, Optimization.AutoForwardDiff())
optprob = Optimization.OptimizationProblem(optfunc, [0.1], prob)
opt_sol = Optimization.solve(optprob, ADAM(), maxiters = 100)

At the Optimization.solve line, it will error out. I can use AutoFiniteDiff, and that will run and output the expected value for A. However the other suggested AD types in documentation will error with various different errors.

I can paste the whole error and stacktrace output if needed, however im running into character limit issues, so for now just have the truncated version here.
Error & Stacktrace ⚠️

ERROR: MethodError: no method matching Float64(::ForwardDiff.Dual{ForwardDiff.Tag{OptimizationForwardDiffExt.var"#37#55"{…}, Float64}, Float64, 1})
The type `Float64` exists, but no method is defined for this combination of argument types when trying to construct it.

Closest candidates are:
  (::Type{T})(::Real, ::RoundingMode) where T<:AbstractFloat
   @ Base rounding.jl:265
  (::Type{T})(::T) where T<:Number
   @ Core boot.jl:900
  Float64(::IrrationalConstants.Log2Ο€)
   @ IrrationalConstants ~/.julia/packages/IrrationalConstants/vp5v4/src/macro.jl:112
  ...

Stacktrace:
  [1] convert(::Type{Float64}, x::ForwardDiff.Dual{ForwardDiff.Tag{…}, Float64, 1})
    @ Base ./number.jl:7
  [2] setindex!(A::Memory{Float64}, x::ForwardDiff.Dual{ForwardDiff.Tag{…}, Float64, 1}, i1::Int64)
    @ Base ./genericmemory.jl:234
  [3] unsafe_copyto!(dest::Memory{Float64}, doffs::Int64, src::Memory{ForwardDiff.Dual{…}}, soffs::Int64, n::Int64)
    @ Base ./genericmemory.jl:144
  [4] unsafe_copyto!
    @ ./genericmemory.jl:124 [inlined]
  [5] _copyto_impl!
    @ ./array.jl:308 [inlined]
  [6] copyto!
    @ ./array.jl:294 [inlined]
  [7] copyto!
    @ ./array.jl:319 [inlined]
  [8] replace!
    @ ~/.julia/packages/ModelingToolkit/eiNg3/src/systems/parameter_buffer.jl:294 [inlined]
  [9] mse_loss(x::Vector{…}, p::ODEProblem{…})
    @ Main ~/OneDrive/School/Lab/Canadian Light Source/data/IMaging/cls/para_est_MWE.jl:38
 [10] (::OptimizationForwardDiffExt.var"#37#55"{…})(::Vector{…})
    @ OptimizationForwardDiffExt ~/.julia/packages/OptimizationBase/KIIy3/ext/OptimizationForwardDiffExt.jl:98
 [11] #39
    @ ~/.julia/packages/OptimizationBase/KIIy3/ext/OptimizationForwardDiffExt.jl:102 [inlined]
 [12] vector_mode_dual_eval!
    @ ~/.julia/packages/ForwardDiff/onEFt/src/apiutils.jl:24 [inlined]
 [13] vector_mode_gradient!(result::Vector{…}, f::OptimizationForwardDiffExt.var"#39#57"{…}, x::Vector{…}, cfg::ForwardDiff.GradientConfig{…})
    @ ForwardDiff ~/.julia/packages/ForwardDiff/onEFt/src/gradient.jl:98
 [14] gradient!
    @ ~/.julia/packages/ForwardDiff/onEFt/src/gradient.jl:39 [inlined]
 [15] (::OptimizationForwardDiffExt.var"#38#56"{…})(::Vector{…}, ::Vector{…})
    @ OptimizationForwardDiffExt ~/.julia/packages/OptimizationBase/KIIy3/ext/OptimizationForwardDiffExt.jl:102
 [16] macro expansion
    @ ~/.julia/packages/OptimizationOptimisers/AOkbT/src/OptimizationOptimisers.jl:68 [inlined]
 [17] macro expansion
    @ ~/.julia/packages/Optimization/4ueet/src/utils.jl:32 [inlined]
 [18] __solve(cache::OptimizationCache{…})
    @ OptimizationOptimisers ~/.julia/packages/OptimizationOptimisers/AOkbT/src/OptimizationOptimisers.jl:66
 [19] solve!(cache::OptimizationCache{…})
    @ SciMLBase ~/.julia/packages/SciMLBase/hJh6T/src/solve.jl:186
 [20] solve(::OptimizationProblem{…}, ::Optimisers.Adam; kwargs::@Kwargs{…})
    @ SciMLBase ~/.julia/packages/SciMLBase/hJh6T/src/solve.jl:94
 [21] top-level scope
    @ ~/OneDrive/School/Lab/Canadian Light Source/data/IMaging/cls/para_est_MWE.jl:46
Some type information was truncated. Use `show(err)` to see complete types.

Environment (please complete the following information):

  • Output of using Pkg; Pkg.status()
  [b0b7db55] ComponentArrays v0.15.17
  [a93c6f00] DataFrames v1.7.0
  [82cc6244] DataInterpolations v6.5.2
  [0c46a032] DifferentialEquations v7.14.0
  [5b8099bc] DomainSets v0.7.14
  [6a86dc24] FiniteDiff v2.26.0
  [26cc04aa] FiniteDifferences v0.12.32
  [033835bb] JLD2 v0.5.7
  [94925ecb] MethodOfLines v0.11.6
  [961ee093] ModelingToolkit v9.49.0
  [3933049c] MultistartOptimization v0.2.2
βŒ… [7f7a1694] Optimization v3.28.0
  [e4316d97] OptimizationMultistartOptimization v0.2.0
βŒƒ [4e6fcdb7] OptimizationNLopt v0.2.2
βŒ… [36348300] OptimizationOptimJL v0.3.2
βŒ… [42dfb2eb] OptimizationOptimisers v0.2.1
βŒƒ [500b13db] OptimizationPolyalgorithms v0.2.1
  [1dea7af3] OrdinaryDiffEq v6.89.0
  [91a5bcdd] Plots v1.40.8
  [29dad682] RegularizationTools v0.6.0
  [37e2e3b7] ReverseDiff v1.15.3
  [53ae85a6] SciMLStructures v1.5.0
  [10745b16] Statistics v1.11.1
  [2efcf032] SymbolicIndexingInterface v0.3.34
  • Output of using Pkg; Pkg.status(; mode = PKGMODE_MANIFEST)
  [47edcb42] ADTypes v1.9.0
  [621f4979] AbstractFFTs v1.5.0
  [1520ce14] AbstractTrees v0.4.5
  [7d9f7c33] Accessors v0.1.38
  [79e6a3ab] Adapt v4.1.1
  [66dad0bd] AliasTables v1.1.3
  [dce04be8] ArgCheck v2.3.0
  [ec485272] ArnoldiMethod v0.4.0
  [4fba245c] ArrayInterface v7.16.0
  [4c555306] ArrayLayouts v1.10.4
  [13072b0f] AxisAlgorithms v1.1.0
  [aae01518] BandedMatrices v1.7.5
  [6e4b80f9] BenchmarkTools v1.5.0
  [e2ed5e7c] Bijections v0.1.9
  [d1d4a3ce] BitFlags v0.1.9
  [62783981] BitTwiddlingConvenienceFunctions v0.1.6
  [8e7c35d0] BlockArrays v1.1.1
  [764a87c0] BoundaryValueDiffEq v5.12.0
  [56b672f2] BoundaryValueDiffEqCore v1.0.1
  [85d9eb09] BoundaryValueDiffEqFIRK v1.0.2
  [1a22d4ce] BoundaryValueDiffEqMIRK v1.0.1
  [ed55bfe0] BoundaryValueDiffEqShooting v1.0.2
  [fa961155] CEnum v0.5.0
  [2a0fbf3d] CPUSummary v0.2.6
  [00ebfdb7] CSTParser v3.4.3
  [49dc2e85] Calculus v0.5.2
  [d360d2e6] ChainRulesCore v1.25.0
  [fb6a15b2] CloseOpenIntervals v0.1.13
  [523fee87] CodecBzip2 v0.8.4
  [944b1d66] CodecZlib v0.7.6
  [35d6a980] ColorSchemes v3.27.0
βŒ… [3da002f7] ColorTypes v0.11.5
  [c3611d14] ColorVectorSpace v0.10.0
βŒƒ [5ae59095] Colors v0.12.11
  [861a8166] Combinatorics v1.0.2
  [a80b9123] CommonMark v0.8.15
  [38540f10] CommonSolve v0.2.4
  [bbf7d656] CommonSubexpressions v0.3.1
  [f70d9fcc] CommonWorldInvalidations v1.0.0
  [34da2185] Compat v4.16.0
  [b0b7db55] ComponentArrays v0.15.17
  [b152e2b5] CompositeTypes v0.1.4
  [a33af91c] CompositionsBase v0.1.2
  [2569d6c7] ConcreteStructs v0.2.3
  [f0e56b4a] ConcurrentUtilities v2.4.2
  [88cd18e8] ConsoleProgressMonitor v0.1.2
  [187b0558] ConstructionBase v1.5.8
  [d38c429a] Contour v0.6.3
  [adafc99b] CpuId v0.3.1
  [a8cc5b0e] Crayons v4.1.1
  [717857b8] DSP v0.7.10
  [9a962f9c] DataAPI v1.16.0
  [a93c6f00] DataFrames v1.7.0
  [82cc6244] DataInterpolations v6.5.2
  [864edb3b] DataStructures v0.18.20
  [e2d170a0] DataValueInterfaces v1.0.0
  [bcd4f6db] DelayDiffEq v5.48.1
  [8bb1440f] DelimitedFiles v1.9.1
  [85a47980] Dictionaries v0.4.2
  [2b5f629d] DiffEqBase v6.158.3
βŒ… [459566f4] DiffEqCallbacks v3.9.1
  [77a26b50] DiffEqNoiseProcess v5.23.0
  [163ba53b] DiffResults v1.1.0
  [b552c78f] DiffRules v1.15.1
  [0c46a032] DifferentialEquations v7.14.0
  [a0c0ee7d] DifferentiationInterface v0.6.18
  [8d63f2c5] DispatchDoctor v0.4.17
  [b4f34e82] Distances v0.10.12
  [31c24e10] Distributions v0.25.112
  [ffbed154] DocStringExtensions v0.9.3
  [5b8099bc] DomainSets v0.7.14
  [7c1d4256] DynamicPolynomials v0.6.0
  [06fc5a27] DynamicQuantities v1.2.0
  [b7d42ee7] Einsum v0.4.1
  [4e289a0a] EnumX v1.0.4
  [f151be2c] EnzymeCore v0.8.5
  [460bff9d] ExceptionUnwrapping v0.1.10
  [d4d017d3] ExponentialUtilities v1.26.1
  [e2ba6199] ExprTools v0.1.10
βŒ… [6b7a57c9] Expronicon v0.8.5
  [c87230d0] FFMPEG v0.4.2
  [7a1cc6ca] FFTW v1.8.0
  [9d29842c] FastAlmostBandedMatrices v0.1.4
  [7034ab61] FastBroadcast v0.3.5
  [9aa1b823] FastClosures v0.3.2
  [29a986be] FastLapackInterface v2.0.4
  [a4df4552] FastPower v1.1.1
  [5789e2e9] FileIO v1.16.4
  [1a297f60] FillArrays v1.13.0
  [64ca27bc] FindFirstFunctions v1.4.1
  [6a86dc24] FiniteDiff v2.26.0
  [26cc04aa] FiniteDifferences v0.12.32
  [53c48c17] FixedPointNumbers v0.8.5
  [1fa38f19] Format v1.3.7
  [f6369f11] ForwardDiff v0.10.37
  [069b7b12] FunctionWrappers v1.1.3
  [77dc65aa] FunctionWrappersWrappers v0.1.3
βŒ… [d9f16b24] Functors v0.4.12
βŒ… [46192b85] GPUArraysCore v0.1.6
  [28b8d3ca] GR v0.73.8
  [14197337] GenericLinearAlgebra v0.3.14
  [c145ed77] GenericSchur v0.5.4
  [c27321d9] Glob v1.3.1
  [86223c79] Graphs v1.12.0
  [42e2da0e] Grisu v1.0.2
  [cd3eb016] HTTP v1.10.9
  [3e5b6fbb] HostCPUFeatures v0.1.17
  [1baab800] HybridArrays v0.4.16
  [34004b35] HypergeometricFunctions v0.3.24
  [615f187c] IfElse v0.1.1
  [313cdc1a] Indexing v1.1.1
  [d25df0c9] Inflate v0.1.5
  [842dd82b] InlineStrings v1.4.2
  [18e54dd8] IntegerMathUtils v0.1.2
  [a98d9a8b] Interpolations v0.15.1
  [8197267c] IntervalSets v0.7.10
  [3587e190] InverseFunctions v0.1.17
  [41ab1584] InvertedIndices v1.3.0
  [92d709cd] IrrationalConstants v0.2.2
  [c8e1da08] IterTools v1.10.0
  [82899510] IteratorInterfaceExtensions v1.0.0
  [033835bb] JLD2 v0.5.7
  [1019f520] JLFzf v0.1.8
  [692b3bcd] JLLWrappers v1.6.1
  [682c06a0] JSON v0.21.4
  [98e50ef6] JuliaFormatter v1.0.62
  [ccbc3e58] JumpProcesses v9.14.0
  [ef3ab10e] KLU v0.6.0
  [2c470bb0] Kronecker v0.5.5
  [ba0b0d4f] Krylov v0.9.8
  [5be7bae1] LBFGSB v0.4.1
  [b964fa9f] LaTeXStrings v1.4.0
  [23fbe1c1] Latexify v0.16.5
  [10f19ff3] LayoutPointers v0.1.17
  [50d2b5c4] Lazy v0.15.1
  [5078a376] LazyArrays v2.2.1
  [0fc2ff8b] LeastSquaresOptim v0.8.5
  [1d6d02ad] LeftChildRightSiblingTrees v0.2.0
  [2d8b4e74] LevyArea v1.0.0
  [87fe0de2] LineSearch v0.1.4
  [d3d80556] LineSearches v7.3.0
  [7a12625a] LinearMaps v3.11.3
  [7ed4a6bd] LinearSolve v2.36.2
  [2ab3a3ac] LogExpFunctions v0.3.28
  [e6f89c97] LoggingExtras v1.1.0
  [bdcacae8] LoopVectorization v0.12.171
  [d8e11817] MLStyle v0.4.17
  [1914dd2f] MacroTools v0.5.13
  [af67fdf4] ManifoldDiff v0.3.12
βŒ… [1cead3c2] Manifolds v0.9.20
  [3362f125] ManifoldsBase v0.15.20
  [d125e4d3] ManualMemory v0.1.8
  [b8f27783] MathOptInterface v1.33.0
  [fdba3010] MathProgBase v0.7.8
  [99c1a7ee] MatrixEquations v2.4.2
  [a3b82374] MatrixFactorizations v3.0.1
  [bb5d69b7] MaybeInplace v0.1.4
  [739be429] MbedTLS v1.1.9
  [442fdcdd] Measures v0.3.2
  [c03570c3] Memoize v0.4.4
  [94925ecb] MethodOfLines v0.11.6
  [e1d29d7a] Missings v1.2.0
  [961ee093] ModelingToolkit v9.49.0
  [46d2c3a1] MuladdMacro v0.2.4
  [3933049c] MultistartOptimization v0.2.2
  [102ac46a] MultivariatePolynomials v0.5.7
  [d8a4904e] MutableArithmetics v1.5.2
  [d41bc354] NLSolversBase v7.8.3
βŒ… [76087f3c] NLopt v0.6.5
  [2774e3e8] NLsolve v4.5.1
  [77ba4419] NaNMath v1.0.2
  [356022a1] NamedDims v1.2.2
βŒ… [8913a72c] NonlinearSolve v3.15.1
  [6fe1bfb0] OffsetArrays v1.14.1
  [4d8831e6] OpenSSL v1.4.3
  [429524aa] Optim v1.9.4
  [3bd65402] Optimisers v0.3.3
βŒ… [7f7a1694] Optimization v3.28.0
βŒ… [bca83a33] OptimizationBase v1.5.0
  [e4316d97] OptimizationMultistartOptimization v0.2.0
βŒƒ [4e6fcdb7] OptimizationNLopt v0.2.2
βŒ… [36348300] OptimizationOptimJL v0.3.2
βŒ… [42dfb2eb] OptimizationOptimisers v0.2.1
βŒƒ [500b13db] OptimizationPolyalgorithms v0.2.1
  [bac558e1] OrderedCollections v1.6.3
  [1dea7af3] OrdinaryDiffEq v6.89.0
  [89bda076] OrdinaryDiffEqAdamsBashforthMoulton v1.1.0
  [6ad6398a] OrdinaryDiffEqBDF v1.1.2
  [bbf590c4] OrdinaryDiffEqCore v1.9.0
  [50262376] OrdinaryDiffEqDefault v1.1.0
  [4302a76b] OrdinaryDiffEqDifferentiation v1.1.0
  [9286f039] OrdinaryDiffEqExplicitRK v1.1.0
  [e0540318] OrdinaryDiffEqExponentialRK v1.1.0
  [becaefa8] OrdinaryDiffEqExtrapolation v1.2.1
  [5960d6e9] OrdinaryDiffEqFIRK v1.2.0
  [101fe9f7] OrdinaryDiffEqFeagin v1.1.0
  [d3585ca7] OrdinaryDiffEqFunctionMap v1.1.1
  [d28bc4f8] OrdinaryDiffEqHighOrderRK v1.1.0
  [9f002381] OrdinaryDiffEqIMEXMultistep v1.1.0
  [521117fe] OrdinaryDiffEqLinear v1.1.0
  [1344f307] OrdinaryDiffEqLowOrderRK v1.2.0
  [b0944070] OrdinaryDiffEqLowStorageRK v1.2.1
  [127b3ac7] OrdinaryDiffEqNonlinearSolve v1.2.1
  [c9986a66] OrdinaryDiffEqNordsieck v1.1.0
  [5dd0a6cf] OrdinaryDiffEqPDIRK v1.1.0
  [5b33eab2] OrdinaryDiffEqPRK v1.1.0
  [04162be5] OrdinaryDiffEqQPRK v1.1.0
  [af6ede74] OrdinaryDiffEqRKN v1.1.0
  [43230ef6] OrdinaryDiffEqRosenbrock v1.2.0
  [2d112036] OrdinaryDiffEqSDIRK v1.1.0
  [669c94d9] OrdinaryDiffEqSSPRK v1.2.0
  [e3e12d00] OrdinaryDiffEqStabilizedIRK v1.1.0
  [358294b1] OrdinaryDiffEqStabilizedRK v1.1.0
  [fa646aed] OrdinaryDiffEqSymplecticRK v1.1.0
  [b1df2697] OrdinaryDiffEqTsit5 v1.1.0
  [79d7bb75] OrdinaryDiffEqVerner v1.1.1
  [a7812802] PDEBase v0.1.15
  [90014a1f] PDMats v0.11.31
  [65ce6f38] PackageExtensionCompat v1.0.2
  [d96e819e] Parameters v0.12.3
  [69de0a69] Parsers v2.8.1
  [b98c9c47] Pipe v1.3.0
  [ccf2f8ad] PlotThemes v3.3.0
  [995b91a9] PlotUtils v1.4.3
  [91a5bcdd] Plots v1.40.8
  [e409e4f3] PoissonRandom v0.4.4
  [f517fe37] Polyester v0.7.16
  [1d0040c9] PolyesterWeave v0.2.2
  [f27b6e38] Polynomials v4.0.11
  [2dfb63ee] PooledArrays v1.4.3
  [85a6dd25] PositiveFactorizations v0.2.4
  [d236fae5] PreallocationTools v0.4.24
  [aea7be01] PrecompileTools v1.2.1
  [21216c6a] Preferences v1.4.3
  [08abe8d2] PrettyTables v2.4.0
  [27ebfcd6] Primes v0.5.6
  [33c8b6b6] ProgressLogging v0.1.4
  [92933f4c] ProgressMeter v1.10.2
  [43287f4e] PtrArrays v1.2.1
  [1fd47b50] QuadGK v2.11.1
  [94ee1d12] Quaternions v0.7.6
  [74087812] Random123 v1.7.0
  [e6cf234a] RandomNumbers v1.6.0
  [c84ed2f1] Ratios v0.4.5
  [c1ae055f] RealDot v0.1.0
  [3cdcf5f2] RecipesBase v1.3.4
  [01d81517] RecipesPipeline v0.6.12
  [731186ca] RecursiveArrayTools v3.27.3
  [f2c3362d] RecursiveFactorization v0.2.23
  [189a3867] Reexport v1.2.2
  [29dad682] RegularizationTools v0.6.0
  [05181044] RelocatableFolders v1.0.1
  [ae029012] Requires v1.3.0
  [ae5879a3] ResettableStacks v1.1.1
  [37e2e3b7] ReverseDiff v1.15.3
  [708f8203] Richardson v1.4.2
  [79098fc4] Rmath v0.8.0
  [47965b36] RootedTrees v2.23.1
  [7e49a35a] RuntimeGeneratedFunctions v0.5.13
  [94e857df] SIMDTypes v0.1.0
  [476501e8] SLEEFPirates v0.6.43
  [0bca4576] SciMLBase v2.58.0
  [19f34311] SciMLJacobianOperators v0.1.1
  [c0aeaf25] SciMLOperators v0.3.12
  [53ae85a6] SciMLStructures v1.5.0
  [6c6a2e73] Scratch v1.2.1
  [91c51154] SentinelArrays v1.4.7
  [efcf1570] Setfield v1.1.1
  [992d4aef] Showoff v1.0.3
  [777ac1f9] SimpleBufferStream v1.2.0
βŒ… [727e6d20] SimpleNonlinearSolve v1.12.3
  [699a6c99] SimpleTraits v0.9.4
  [ce78b400] SimpleUnPack v1.1.0
  [47aef6b3] SimpleWeightedGraphs v1.4.0
  [ed01d8cd] Sobol v1.5.0
  [a2af1166] SortingAlgorithms v1.2.1
  [9f842d2f] SparseConnectivityTracer v0.6.8
  [47a9eef4] SparseDiffTools v2.23.0
  [0a514795] SparseMatrixColorings v0.4.8
  [e56a9233] Sparspak v0.3.9
  [276daf66] SpecialFunctions v2.4.0
  [860ef19b] StableRNGs v1.0.2
  [aedffcd0] Static v1.1.1
  [0d7ed370] StaticArrayInterface v1.8.0
  [90137ffa] StaticArrays v1.9.8
  [1e83bf80] StaticArraysCore v1.4.3
  [10745b16] Statistics v1.11.1
  [82ae8749] StatsAPI v1.7.0
  [2913bbd2] StatsBase v0.34.3
  [4c63d2b9] StatsFuns v1.3.2
  [9672c7b4] SteadyStateDiffEq v2.4.1
  [789caeaf] StochasticDiffEq v6.70.0
  [7792a7ef] StrideArraysCore v0.5.7
  [892a3eda] StringManipulation v0.4.0
  [c3572dad] Sundials v4.26.0
  [4297ee4d] SymbolicAnalysis v0.3.0
  [2efcf032] SymbolicIndexingInterface v0.3.34
  [19f23fe9] SymbolicLimits v0.2.2
  [d1185830] SymbolicUtils v3.7.2
  [0c5d862f] Symbolics v6.18.1
  [3783bdb8] TableTraits v1.0.1
  [bd369af6] Tables v1.12.0
  [62fd8b95] TensorCore v0.1.1
  [8ea1fca8] TermInterface v2.0.0
  [5d786b92] TerminalLoggers v0.1.7
  [1c621080] TestItems v1.0.0
  [8290d209] ThreadingUtilities v0.5.2
  [a759f4b9] TimerOutputs v0.5.25
  [0796e94c] Tokenize v0.5.29
  [3bb67fe8] TranscodingStreams v0.11.3
  [d5829a12] TriangularSolve v0.2.1
  [410a4b4d] Tricks v0.1.9
  [781d530d] TruncatedStacktraces v1.4.0
  [5c2747f8] URIs v1.5.1
  [3a884ed6] UnPack v1.0.2
  [d9a01c3f] Underscores v3.0.0
  [1cfade01] UnicodeFun v0.4.1
  [1986cc42] Unitful v1.21.0
  [45397f5d] UnitfulLatexify v1.6.4
  [a7c27f48] Unityper v0.1.6
  [41fe7b60] Unzip v0.2.0
  [3d5dd08c] VectorizationBase v0.21.71
  [19fa3120] VertexSafeGraphs v0.2.0
  [efce3f68] WoodburyMatrices v1.0.0
  [6e34b625] Bzip2_jll v1.0.8+2
  [83423d85] Cairo_jll v1.18.2+1
  [ee1fde0b] Dbus_jll v1.14.10+0
  [2702e6a9] EpollShim_jll v0.0.20230411+0
  [2e619515] Expat_jll v2.6.2+0
βŒ… [b22a6f82] FFMPEG_jll v4.4.4+1
  [f5851436] FFTW_jll v3.3.10+1
  [a3f928ae] Fontconfig_jll v2.13.96+0
  [d7e528f0] FreeType2_jll v2.13.2+0
  [559328eb] FriBidi_jll v1.0.14+0
  [0656b61e] GLFW_jll v3.4.0+1
  [d2c73de3] GR_jll v0.73.8+0
  [78b55507] Gettext_jll v0.21.0+0
  [7746bdde] Glib_jll v2.80.5+0
  [3b182d85] Graphite2_jll v1.3.14+0
  [2e76f6c2] HarfBuzz_jll v8.3.1+0
  [1d5cc7b8] IntelOpenMP_jll v2024.2.1+0
  [aacddb02] JpegTurbo_jll v3.0.4+0
  [c1c5ebd0] LAME_jll v3.100.2+0
  [88015f11] LERC_jll v4.0.0+0
  [1d63c593] LLVMOpenMP_jll v18.1.7+0
  [dd4b983a] LZO_jll v2.10.2+1
  [81d17ec3] L_BFGS_B_jll v3.0.1+0
βŒ… [e9f186c6] Libffi_jll v3.2.2+1
  [d4300ac3] Libgcrypt_jll v1.11.0+0
  [7e76a0d4] Libglvnd_jll v1.6.0+0
  [7add5ba3] Libgpg_error_jll v1.50.0+0
  [94ce4f54] Libiconv_jll v1.17.0+1
  [4b2f31a3] Libmount_jll v2.40.1+0
  [89763e89] Libtiff_jll v4.7.0+0
  [38a345b3] Libuuid_jll v2.40.1+0
  [856f044c] MKL_jll v2024.2.0+0
  [079eb43e] NLopt_jll v2.8.0+0
  [e7412a2a] Ogg_jll v1.3.5+1
  [458c3c95] OpenSSL_jll v3.0.15+1
  [efe28fd5] OpenSpecFun_jll v0.5.5+0
  [91d4177d] Opus_jll v1.3.3+0
  [36c8627f] Pango_jll v1.54.1+0
  [30392449] Pixman_jll v0.43.4+0
  [c0090381] Qt6Base_jll v6.7.1+1
  [629bc702] Qt6Declarative_jll v6.7.1+2
  [ce943373] Qt6ShaderTools_jll v6.7.1+1
  [e99dba38] Qt6Wayland_jll v6.7.1+1
  [f50d1b31] Rmath_jll v0.5.1+0
βŒ… [fb77eaff] Sundials_jll v5.2.3+0
  [a44049a8] Vulkan_Loader_jll v1.3.243+0
  [a2964d1f] Wayland_jll v1.21.0+1
  [2381bf8a] Wayland_protocols_jll v1.31.0+0
  [02c8fc9c] XML2_jll v2.13.4+0
  [aed1982a] XSLT_jll v1.1.41+0
  [ffd25f8a] XZ_jll v5.6.3+0
  [f67eecfb] Xorg_libICE_jll v1.1.1+0
  [c834827a] Xorg_libSM_jll v1.2.4+0
  [4f6342f7] Xorg_libX11_jll v1.8.6+0
  [0c0b7dd1] Xorg_libXau_jll v1.0.11+0
  [935fb764] Xorg_libXcursor_jll v1.2.0+4
  [a3789734] Xorg_libXdmcp_jll v1.1.4+0
  [1082639a] Xorg_libXext_jll v1.3.6+0
  [d091e8ba] Xorg_libXfixes_jll v5.0.3+4
  [a51aa0fd] Xorg_libXi_jll v1.7.10+4
  [d1454406] Xorg_libXinerama_jll v1.1.4+4
  [ec84b674] Xorg_libXrandr_jll v1.5.2+4
  [ea2f1a96] Xorg_libXrender_jll v0.9.11+0
  [14d82f49] Xorg_libpthread_stubs_jll v0.1.1+0
  [c7cfdc94] Xorg_libxcb_jll v1.17.0+0
  [cc61e674] Xorg_libxkbfile_jll v1.1.2+0
  [e920d4aa] Xorg_xcb_util_cursor_jll v0.1.4+0
  [12413925] Xorg_xcb_util_image_jll v0.4.0+1
  [2def613f] Xorg_xcb_util_jll v0.4.0+1
  [975044d2] Xorg_xcb_util_keysyms_jll v0.4.0+1
  [0d47668e] Xorg_xcb_util_renderutil_jll v0.3.9+1
  [c22f9ab0] Xorg_xcb_util_wm_jll v0.4.1+1
  [35661453] Xorg_xkbcomp_jll v1.4.6+0
  [33bec58e] Xorg_xkeyboard_config_jll v2.39.0+0
  [c5fb5394] Xorg_xtrans_jll v1.5.0+0
  [3161d3a3] Zstd_jll v1.5.6+1
  [35ca27e7] eudev_jll v3.2.9+0
  [214eeab7] fzf_jll v0.53.0+0
  [1a1c6b14] gperf_jll v3.1.1+0
  [a4ae2306] libaom_jll v3.9.0+0
  [0ac62f75] libass_jll v0.15.2+0
  [1183f4f0] libdecor_jll v0.2.2+0
  [2db6ffa8] libevdev_jll v1.11.0+0
  [f638f0a6] libfdk_aac_jll v2.0.3+0
  [36db933b] libinput_jll v1.18.0+0
  [b53b4c65] libpng_jll v1.6.44+0
  [f27f6e37] libvorbis_jll v1.3.7+2
  [009596ad] mtdev_jll v1.1.6+0
  [1317d2d5] oneTBB_jll v2021.12.0+0
βŒ… [1270edf5] x264_jll v2021.5.5+0
βŒ… [dfaa095f] x265_jll v3.5.0+0
  [d8fb68d0] xkbcommon_jll v1.4.1+1
  [0dad84c5] ArgTools v1.1.2
  [56f22d72] Artifacts v1.11.0
  [2a0f44e3] Base64 v1.11.0
  [ade2ca70] Dates v1.11.0
  [8ba89e20] Distributed v1.11.0
  [f43a241f] Downloads v1.6.0
  [7b1f6079] FileWatching v1.11.0
  [9fa8497b] Future v1.11.0
  [b77e0a4c] InteractiveUtils v1.11.0
  [4af54fe1] LazyArtifacts v1.11.0
  [b27032c2] LibCURL v0.6.4
  [76f85450] LibGit2 v1.11.0
  [8f399da3] Libdl v1.11.0
  [37e2e46d] LinearAlgebra v1.11.0
  [56ddb016] Logging v1.11.0
  [d6f4376e] Markdown v1.11.0
  [a63ad114] Mmap v1.11.0
  [ca575930] NetworkOptions v1.2.0
  [44cfe95a] Pkg v1.11.0
  [de0858da] Printf v1.11.0
  [9abbd945] Profile v1.11.0
  [3fa0cd96] REPL v1.11.0
  [9a3f8284] Random v1.11.0
  [ea8e919c] SHA v0.7.0
  [9e88b42a] Serialization v1.11.0
  [1a1011a3] SharedArrays v1.11.0
  [6462fe0b] Sockets v1.11.0
  [2f01184e] SparseArrays v1.11.0
  [f489334b] StyledStrings v1.11.0
  [4607b0f0] SuiteSparse
  [fa267f1f] TOML v1.0.3
  [a4e569a6] Tar v1.10.0
  [8dfed614] Test v1.11.0
  [cf7118a7] UUIDs v1.11.0
  [4ec0a83e] Unicode v1.11.0
  [e66e0078] CompilerSupportLibraries_jll v1.1.1+0
  [deac9b47] LibCURL_jll v8.6.0+0
  [e37daf67] LibGit2_jll v1.7.2+0
  [29816b5a] LibSSH2_jll v1.11.0+1
  [c8ffd9c3] MbedTLS_jll v2.28.6+0
  [14a3606d] MozillaCACerts_jll v2023.12.12
  [4536629a] OpenBLAS_jll v0.3.27+1
  [05823500] OpenLibm_jll v0.8.1+2
  [efcefdf7] PCRE2_jll v10.42.0+1
  [bea87d4a] SuiteSparse_jll v7.7.0+0
  [83775a58] Zlib_jll v1.2.13+1
  [8e850b90] libblastrampoline_jll v5.11.0+0
  [8e850ede] nghttp2_jll v1.59.0+0
  [3f19e933] p7zip_jll v17.4.0+2
  • Output of versioninfo()
julia> versioninfo()
Julia Version 1.11.1
Commit 8f5b7ca12ad (2024-10-16 10:53 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
  CPU: 16 Γ— AMD Ryzen 7 6800H with Radeon Graphics
  WORD_SIZE: 64
  LLVM: libLLVM-16.0.6 (ORCJIT, znver3)
Threads: 16 default, 0 interactive, 8 GC (on 16 virtual cores)
Environment:
  JULIA_EDITOR = code

Metadata

Metadata

Assignees

No one assigned

    Labels

    questionFurther information is requested

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions