build based on d7146fe

Author: Documenter.jl

dev/.documenter-siteinfo.json

@@ -1 +1 @@
-{"documenter":{"julia_version":"1.11.0","generation_timestamp":"2024-10-10T15:37:04","documenter_version":"1.7.0"}}
+{"documenter":{"julia_version":"1.11.1","generation_timestamp":"2024-10-17T21:04:06","documenter_version":"1.7.0"}}

dev/assets/Manifest.toml

@@ -1,6 +1,6 @@
 # This file is machine-generated - editing it directly is not advised
 
-julia_version = "1.11.0"
+julia_version = "1.11.1"
 manifest_format = "2.0"
 project_hash = "1b48aa28050bdcb1e75e08b59e63845ce8dae6b2"
 
@@ -186,10 +186,10 @@ uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa"
 version = "1.0.2"
 
 [[deps.CommonMark]]
-deps = ["Crayons", "JSON", "PrecompileTools", "URIs"]
-git-tree-sha1 = "532c4185d3c9037c0237546d817858b23cf9e071"
+deps = ["Crayons", "PrecompileTools"]
+git-tree-sha1 = "3faae67b8899797592335832fccf4b3c80bb04fa"
 uuid = "a80b9123-70ca-4bc0-993e-6e3bcb318db6"
-version = "0.8.12"
+version = "0.8.15"
 
 [[deps.CommonSolve]]
 git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c"
@@ -285,10 +285,10 @@ uuid = "ade2ca70-3891-5945-98fb-dc099432e06a"
 version = "1.11.0"
 
 [[deps.DiffEqBase]]
-deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"]
-git-tree-sha1 = "ada2a9faba0e365dca3cc456b5eca94cf3887ac3"
+deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "Statistics", "TruncatedStacktraces"]
+git-tree-sha1 = "9c36ac68cf6c59a1c2569aadd7a62c47ed5c8eb5"
 uuid = "2b5f629d-d688-5b77-993f-72d75c75574e"
-version = "6.156.1"
+version = "6.158.1"
 
     [deps.DiffEqBase.extensions]
     DiffEqBaseCUDAExt = "CUDA"
@@ -319,15 +319,10 @@ version = "6.156.1"
     Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d"
 
 [[deps.DiffEqCallbacks]]
-deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebra", "Markdown", "NonlinearSolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"]
-git-tree-sha1 = "19dbd44d18bbfdfcf5e56c99cea9b0ed23df350a"
+deps = ["ConcreteStructs", "DataStructures", "DiffEqBase", "DifferentiationInterface", "Functors", "LinearAlgebra", "Markdown", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"]
+git-tree-sha1 = "7f700fa4fb6e55f4672f8218ef228107245a2e9d"
 uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def"
-version = "3.9.1"
-
-    [deps.DiffEqCallbacks.weakdeps]
-    OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"
-    OrdinaryDiffEqCore = "bbf590c4-e513-4bbe-9b18-05decba2e5d8"
-    Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4"
+version = "4.0.0"
 
 [[deps.DiffEqNoiseProcess]]
 deps = ["DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "Optim", "PoissonRandom", "QuadGK", "Random", "Random123", "RandomNumbers", "RecipesBase", "RecursiveArrayTools", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"]
@@ -354,10 +349,10 @@ uuid = "b552c78f-8df3-52c6-915a-8e097449b14b"
 version = "1.15.1"
 
 [[deps.DifferentiationInterface]]
-deps = ["ADTypes", "Compat", "LinearAlgebra", "PackageExtensionCompat"]
-git-tree-sha1 = "244edd7cc523080c6ebc8ebc71891ca9fe163c0f"
+deps = ["ADTypes", "LinearAlgebra"]
+git-tree-sha1 = "e61c544812d735a53ffbf406a80a73b7c2425532"
 uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63"
-version = "0.6.4"
+version = "0.6.9"
 
     [deps.DifferentiationInterface.extensions]
     DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore"
@@ -548,19 +543,21 @@ uuid = "64ca27bc-2ba2-4a57-88aa-44e436879224"
 version = "1.4.1"
 
 [[deps.FiniteDiff]]
-deps = ["ArrayInterface", "LinearAlgebra", "Setfield", "SparseArrays"]
-git-tree-sha1 = "f9219347ebf700e77ca1d48ef84e4a82a6701882"
+deps = ["ArrayInterface", "LinearAlgebra", "Setfield"]
+git-tree-sha1 = "b10bdafd1647f57ace3885143936749d61638c3b"
 uuid = "6a86dc24-6348-571c-b903-95158fe2bd41"
-version = "2.24.0"
+version = "2.26.0"
 
     [deps.FiniteDiff.extensions]
     FiniteDiffBandedMatricesExt = "BandedMatrices"
     FiniteDiffBlockBandedMatricesExt = "BlockBandedMatrices"
+    FiniteDiffSparseArraysExt = "SparseArrays"
     FiniteDiffStaticArraysExt = "StaticArrays"
 
     [deps.FiniteDiff.weakdeps]
     BandedMatrices = "aae01518-5342-5314-be14-df237901396f"
     BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0"
+    SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
     StaticArrays = "90137ffa-7385-5640-81b9-e52037218182"
 
 [[deps.Format]]
@@ -718,9 +715,9 @@ version = "0.21.4"
 
 [[deps.JuliaFormatter]]
 deps = ["CSTParser", "CommonMark", "DataStructures", "Glob", "PrecompileTools", "TOML", "Tokenize"]
-git-tree-sha1 = "bb4696471330275adfd6c78c6173f276e8c067aa"
+git-tree-sha1 = "5dec500b17416a7ec017f64fd8ebbd142ae8c1c2"
 uuid = "98e50ef6-434e-11e9-1051-2b60c6c9e899"
-version = "1.0.60"
+version = "1.0.61"
 
 [[deps.JumpProcesses]]
 deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "Markdown", "PoissonRandom", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "Setfield", "StaticArrays", "SymbolicIndexingInterface", "UnPack"]
@@ -836,6 +833,16 @@ git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175"
 uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531"
 version = "1.17.0+0"
 
+[[deps.LineSearch]]
+deps = ["ADTypes", "CommonSolve", "ConcreteStructs", "FastClosures", "LinearAlgebra", "MaybeInplace", "SciMLBase", "SciMLJacobianOperators", "StaticArraysCore"]
+git-tree-sha1 = "dc82b3c3640a4362f09e4d7594b4387a820857e4"
+uuid = "87fe0de2-c867-4266-b59a-2f0a94fc965b"
+version = "0.1.3"
+weakdeps = ["LineSearches"]
+
+    [deps.LineSearch.extensions]
+    LineSearchLineSearchesExt = "LineSearches"
+
 [[deps.LineSearches]]
 deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "Printf"]
 git-tree-sha1 = "e4c3be53733db1051cc15ecf573b1042b3a712a1"
@@ -973,10 +980,10 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804"
 version = "1.11.0"
 
 [[deps.ModelingToolkit]]
-deps = ["AbstractTrees", "ArrayInterface", "BlockArrays", "Combinatorics", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "DiffRules", "Distributed", "Distributions", "DocStringExtensions", "DomainSets", "DynamicQuantities", "ExprTools", "Expronicon", "FindFirstFunctions", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "Graphs", "InteractiveUtils", "JuliaFormatter", "JumpProcesses", "Latexify", "Libdl", "LinearAlgebra", "MLStyle", "NaNMath", "NonlinearSolve", "OrderedCollections", "PrecompileTools", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "URIs", "UnPack", "Unitful"]
-git-tree-sha1 = "00140c3b93fbbbd317a71a65c578306d0d72b1be"
+deps = ["AbstractTrees", "ArrayInterface", "BlockArrays", "Combinatorics", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "DiffRules", "Distributed", "Distributions", "DocStringExtensions", "DomainSets", "DynamicQuantities", "ExprTools", "Expronicon", "FindFirstFunctions", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "Graphs", "InteractiveUtils", "JuliaFormatter", "JumpProcesses", "Latexify", "Libdl", "LinearAlgebra", "MLStyle", "NaNMath", "NonlinearSolve", "OffsetArrays", "OrderedCollections", "PrecompileTools", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "URIs", "UnPack", "Unitful"]
+git-tree-sha1 = "6bd76441412fece207dd24dfa016d0d6e89cb8c1"
 uuid = "961ee093-0014-501f-94e3-6117800e7a78"
-version = "9.41.0"
+version = "9.45.0"
 
     [deps.ModelingToolkit.extensions]
     MTKBifurcationKitExt = "BifurcationKit"
@@ -1001,9 +1008,9 @@ version = "0.2.4"
 
 [[deps.MultivariatePolynomials]]
 deps = ["ChainRulesCore", "DataStructures", "LinearAlgebra", "MutableArithmetics"]
-git-tree-sha1 = "5c1d1d9361e1417e5a065e1f84dc3686cbdaea21"
+git-tree-sha1 = "8d39779e29f80aa6c071e7ac17101c6e31f075d7"
 uuid = "102ac46a-7ee4-5c85-9060-abc95bfdeaa3"
-version = "0.5.6"
+version = "0.5.7"
 
 [[deps.MutableArithmetics]]
 deps = ["LinearAlgebra", "SparseArrays", "Test"]
@@ -1028,10 +1035,10 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"
 version = "1.2.0"
 
 [[deps.NonlinearSolve]]
-deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "LazyArrays", "LineSearches", "LinearAlgebra", "LinearSolve", "MaybeInplace", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"]
-git-tree-sha1 = "bcd8812e751326ff1d4b2dd50764b93df51f143b"
+deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "DifferentiationInterface", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "LazyArrays", "LineSearch", "LineSearches", "LinearAlgebra", "LinearSolve", "MaybeInplace", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLJacobianOperators", "SciMLOperators", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SparseConnectivityTracer", "SparseMatrixColorings", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"]
+git-tree-sha1 = "4d8944f32db2b07a2bdf8477e878bcb9c9ea2308"
 uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec"
-version = "3.14.0"
+version = "3.15.1"
 
     [deps.NonlinearSolve.extensions]
     NonlinearSolveBandedMatricesExt = "BandedMatrices"
@@ -1043,8 +1050,6 @@ version = "3.14.0"
     NonlinearSolveNLsolveExt = "NLsolve"
     NonlinearSolveSIAMFANLEquationsExt = "SIAMFANLEquations"
     NonlinearSolveSpeedMappingExt = "SpeedMapping"
-    NonlinearSolveSymbolicsExt = "Symbolics"
-    NonlinearSolveZygoteExt = "Zygote"
 
     [deps.NonlinearSolve.weakdeps]
     BandedMatrices = "aae01518-5342-5314-be14-df237901396f"
@@ -1056,8 +1061,6 @@ version = "3.14.0"
     NLsolve = "2774e3e8-f4cf-5e23-947b-6d7e65073b56"
     SIAMFANLEquations = "084e46ad-d928-497d-ad5e-07fa361a48c4"
     SpeedMapping = "f1835b91-879b-4a3f-a438-e4baacf14412"
-    Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7"
-    Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f"
 
 [[deps.OffsetArrays]]
 git-tree-sha1 = "1a27764e945a152f7ca7efa04de513d473e9542e"
@@ -1345,9 +1348,9 @@ version = "0.6.43"
 
 [[deps.SciMLBase]]
 deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"]
-git-tree-sha1 = "885904799812ed88a607c03b38e9c3a4a5b08853"
+git-tree-sha1 = "50ed64cd5ad79b0bef71fdb6a11d10c3448bfef0"
 uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462"
-version = "2.55.0"
+version = "2.56.1"
 
     [deps.SciMLBase.extensions]
     SciMLBaseChainRulesCoreExt = "ChainRulesCore"
@@ -1368,6 +1371,12 @@ version = "2.55.0"
     RCall = "6f49c342-dc21-5d91-9882-a32aef131414"
     Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f"
 
+[[deps.SciMLJacobianOperators]]
+deps = ["ADTypes", "ConcreteStructs", "ConstructionBase", "DifferentiationInterface", "FastClosures", "LinearAlgebra", "SciMLBase", "SciMLOperators"]
+git-tree-sha1 = "991d2a8900e687e2c693d587daa739c8fda01366"
+uuid = "19f34311-ddf3-4b8b-af20-060888a46c0e"
+version = "0.1.0"
+
 [[deps.SciMLOperators]]
 deps = ["Accessors", "ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools"]
 git-tree-sha1 = "e39c5f217f9aca640c8e27ab21acf557a3967db5"
@@ -1439,25 +1448,37 @@ deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"]
 uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
 version = "1.11.0"
 
-[[deps.SparseDiffTools]]
-deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"]
-git-tree-sha1 = "7db12cef226aaa8ca730040c9c35e32b86a69b83"
-uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804"
-version = "2.22.0"
-
-    [deps.SparseDiffTools.extensions]
-    SparseDiffToolsEnzymeExt = "Enzyme"
-    SparseDiffToolsPolyesterExt = "Polyester"
-    SparseDiffToolsPolyesterForwardDiffExt = "PolyesterForwardDiff"
-    SparseDiffToolsSymbolicsExt = "Symbolics"
-    SparseDiffToolsZygoteExt = "Zygote"
-
-    [deps.SparseDiffTools.weakdeps]
-    Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9"
-    Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588"
-    PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b"
-    Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7"
-    Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f"
+[[deps.SparseConnectivityTracer]]
+deps = ["ADTypes", "DocStringExtensions", "FillArrays", "LinearAlgebra", "Random", "SparseArrays"]
+git-tree-sha1 = "35d346f6aa78814859f1f69cd4f41c24108afa00"
+uuid = "9f842d2f-2579-4b1d-911e-f412cf18a3f5"
+version = "0.6.7"
+
+    [deps.SparseConnectivityTracer.extensions]
+    SparseConnectivityTracerDataInterpolationsExt = "DataInterpolations"
+    SparseConnectivityTracerLogExpFunctionsExt = "LogExpFunctions"
+    SparseConnectivityTracerNNlibExt = "NNlib"
+    SparseConnectivityTracerNaNMathExt = "NaNMath"
+    SparseConnectivityTracerSpecialFunctionsExt = "SpecialFunctions"
+
+    [deps.SparseConnectivityTracer.weakdeps]
+    DataInterpolations = "82cc6244-b520-54b8-b5a6-8a565e85f1d0"
+    LogExpFunctions = "2ab3a3ac-af41-5b50-aa03-7779005ae688"
+    NNlib = "872c559c-99b0-510c-b3b7-b6c96a88d5cd"
+    NaNMath = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3"
+    SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b"
+
+[[deps.SparseMatrixColorings]]
+deps = ["ADTypes", "DataStructures", "DocStringExtensions", "LinearAlgebra", "Random", "SparseArrays"]
+git-tree-sha1 = "ccc32032d8f6790ad198c99fb8ef20d8100a0de4"
+uuid = "0a514795-09f3-496d-8182-132a7b665d35"
+version = "0.4.7"
+
+    [deps.SparseMatrixColorings.extensions]
+    SparseMatrixColoringsColorsExt = "Colors"
+
+    [deps.SparseMatrixColorings.weakdeps]
+    Colors = "5ae59095-9a9b-59fe-a467-6f913c188581"
 
 [[deps.Sparspak]]
 deps = ["Libdl", "LinearAlgebra", "Logging", "OffsetArrays", "Printf", "SparseArrays", "Test"]
@@ -1653,19 +1674,19 @@ version = "0.5.2"
 
 [[deps.TimerOutputs]]
 deps = ["ExprTools", "Printf"]
-git-tree-sha1 = "5a13ae8a41237cff5ecf34f73eb1b8f42fff6531"
+git-tree-sha1 = "3a6f063d690135f5c1ba351412c82bae4d1402bf"
 uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f"
-version = "0.5.24"
+version = "0.5.25"
 
 [[deps.Tokenize]]
 git-tree-sha1 = "468b4685af4abe0e9fd4d7bf495a6554a6276e75"
 uuid = "0796e94c-ce3b-5d07-9a54-7f471281c624"
 version = "0.5.29"
 
 [[deps.TranscodingStreams]]
-git-tree-sha1 = "e84b3a11b9bece70d14cce63406bbc79ed3464d2"
+git-tree-sha1 = "0c45878dcfdcfa8480052b6ab162cdd138781742"
 uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
-version = "0.11.2"
+version = "0.11.3"
 
 [[deps.TriangularSolve]]
 deps = ["CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "LoopVectorization", "Polyester", "Static", "VectorizationBase"]
@@ -1726,12 +1747,6 @@ git-tree-sha1 = "e7f5b81c65eb858bed630fe006837b935518aca5"
 uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f"
 version = "0.21.70"
 
-[[deps.VertexSafeGraphs]]
-deps = ["Graphs"]
-git-tree-sha1 = "8351f8d73d7e880bfc042a8b6922684ebeafb35c"
-uuid = "19fa3120-7c27-5ec5-8db8-b0b0aa330d6f"
-version = "0.2.0"
-
 [[deps.Zlib_jll]]
 deps = ["Libdl"]
 uuid = "83775a58-1f1d-513f-b197-d71354ab007a"