Updates

Author: ParamThakkar123

benchmarks/DynamicalODE/Henon-Heiles_energy_conservation_benchmark.jmd

@@ -18,8 +18,6 @@ In order to separate these two, we will use `iip` for the in-place names and `oo
 ```julia
 using OrdinaryDiffEq, Plots, DiffEqCallbacks
 using SciMLBenchmarks
-using ADTypes
-using DifferentialEquations
 using TaylorIntegration, LinearAlgebra, StaticArrays
 gr(fmt=:png)
 default(fmt=:png)

benchmarks/DynamicalODE/Manifest.toml

@@ -2,7 +2,7 @@
 
 julia_version = "1.10.5"
 manifest_format = "2.0"
-project_hash = "0606d91e8b8951374c26d5533f0b47f89fbee450"
+project_hash = "268db6928ccffd4d6f79409a36ddb0a44c29d12b"
 
 [[deps.ADTypes]]
 git-tree-sha1 = "eea5d80188827b35333801ef97a40c2ed653b081"
@@ -113,16 +113,6 @@ weakdeps = ["SparseArrays"]
 [[deps.Artifacts]]
 uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
 
-[[deps.BandedMatrices]]
-deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "PrecompileTools"]
-git-tree-sha1 = "a2c85f53ddcb15b4099da59867868bd40f005579"
-uuid = "aae01518-5342-5314-be14-df237901396f"
-version = "1.7.5"
-weakdeps = ["SparseArrays"]
-
-    [deps.BandedMatrices.extensions]
-    BandedMatricesSparseArraysExt = "SparseArrays"
-
 [[deps.Base64]]
 uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
 
@@ -147,34 +137,19 @@ deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra"]
 git-tree-sha1 = "d434647f798823bcae510aee0bc0401927f64391"
 uuid = "8e7c35d0-a365-5155-bbbb-fb81a777f24e"
 version = "1.1.1"
-weakdeps = ["BandedMatrices"]
 
     [deps.BlockArrays.extensions]
     BlockArraysBandedMatricesExt = "BandedMatrices"
 
-[[deps.BoundaryValueDiffEq]]
-deps = ["ADTypes", "Adapt", "ArrayInterface", "BandedMatrices", "ConcreteStructs", "DiffEqBase", "FastAlmostBandedMatrices", "FastClosures", "ForwardDiff", "LineSearch", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "NonlinearSolve", "OrdinaryDiffEq", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "Setfield", "SparseArrays", "SparseDiffTools"]
-git-tree-sha1 = "8dba4ea86fce8ed94977ed9e56cf5c6d67c494e5"
-uuid = "764a87c0-6b3e-53db-9096-fe964310641d"
-version = "5.11.0"
-
-    [deps.BoundaryValueDiffEq.extensions]
-    BoundaryValueDiffEqODEInterfaceExt = "ODEInterface"
-
-    [deps.BoundaryValueDiffEq.weakdeps]
-    ODEInterface = "54ca160b-1b9f-5127-a996-1867f4bc2a2c"
+    [deps.BlockArrays.weakdeps]
+    BandedMatrices = "aae01518-5342-5314-be14-df237901396f"
 
 [[deps.Bzip2_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "8873e196c2eb87962a2048b3b8e08946535864a1"
 uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0"
 version = "1.0.8+2"
 
-[[deps.CEnum]]
-git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc"
-uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82"
-version = "0.5.0"
-
 [[deps.CPUSummary]]
 deps = ["CpuId", "IfElse", "PrecompileTools", "Static"]
 git-tree-sha1 = "5a97e67919535d6841172016c9530fd69494e5ec"
@@ -369,12 +344,6 @@ git-tree-sha1 = "fc173b380865f70627d7dd1190dc2fce6cc105af"
 uuid = "ee1fde0b-3d02-5ea6-8484-8dfef6360eab"
 version = "1.14.10+0"
 
-[[deps.DelayDiffEq]]
-deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "LinearAlgebra", "Logging", "OrdinaryDiffEq", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SimpleUnPack"]
-git-tree-sha1 = "066f60231c1b0ae2905ffd2651e207accd91f627"
-uuid = "bcd4f6db-9728-5f36-b5f7-82caef46ccdb"
-version = "5.48.1"
-
 [[deps.DelimitedFiles]]
 deps = ["Mmap"]
 git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae"
@@ -420,7 +389,11 @@ deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebr
 git-tree-sha1 = "19dbd44d18bbfdfcf5e56c99cea9b0ed23df350a"
 uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def"
 version = "3.9.1"
-weakdeps = ["OrdinaryDiffEq", "OrdinaryDiffEqCore", "Sundials"]
+
+    [deps.DiffEqCallbacks.weakdeps]
+    OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"
+    OrdinaryDiffEqCore = "bbf590c4-e513-4bbe-9b18-05decba2e5d8"
+    Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4"
 
 [[deps.DiffEqNoiseProcess]]
 deps = ["DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "Optim", "PoissonRandom", "QuadGK", "Random", "Random123", "RandomNumbers", "RecipesBase", "RecursiveArrayTools", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"]
@@ -452,12 +425,6 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272"
 uuid = "b552c78f-8df3-52c6-915a-8e097449b14b"
 version = "1.15.1"
 
-[[deps.DifferentialEquations]]
-deps = ["BoundaryValueDiffEq", "DelayDiffEq", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "JumpProcesses", "LinearAlgebra", "LinearSolve", "NonlinearSolve", "OrdinaryDiffEq", "Random", "RecursiveArrayTools", "Reexport", "SciMLBase", "SteadyStateDiffEq", "StochasticDiffEq", "Sundials"]
-git-tree-sha1 = "d851f2ca05f3cec9988f081b047a778a58b48aaf"
-uuid = "0c46a032-eb83-5123-abaf-570d42b7fbaa"
-version = "7.14.0"
-
 [[deps.DifferentiationInterface]]
 deps = ["ADTypes", "LinearAlgebra"]
 git-tree-sha1 = "16611777adf4a818f18c33210895947814180964"
@@ -511,17 +478,6 @@ weakdeps = ["ChainRulesCore", "EnzymeCore"]
     DispatchDoctorChainRulesCoreExt = "ChainRulesCore"
     DispatchDoctorEnzymeCoreExt = "EnzymeCore"
 
-[[deps.Distances]]
-deps = ["LinearAlgebra", "Statistics", "StatsAPI"]
-git-tree-sha1 = "c7e3a542b999843086e2f29dac96a618c105be1d"
-uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7"
-version = "0.10.12"
-weakdeps = ["ChainRulesCore", "SparseArrays"]
-
-    [deps.Distances.extensions]
-    DistancesChainRulesCoreExt = "ChainRulesCore"
-    DistancesSparseArraysExt = "SparseArrays"
-
 [[deps.Distributed]]
 deps = ["Random", "Serialization", "Sockets"]
 uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
@@ -661,12 +617,6 @@ git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e"
 uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5"
 version = "4.4.4+1"
 
-[[deps.FastAlmostBandedMatrices]]
-deps = ["ArrayInterface", "ArrayLayouts", "BandedMatrices", "ConcreteStructs", "LazyArrays", "LinearAlgebra", "MatrixFactorizations", "PrecompileTools", "Reexport"]
-git-tree-sha1 = "3f03d94c71126b6cfe20d3cbcc41c5cd27e1c419"
-uuid = "9d29842c-ecb8-4973-b1e9-a27b1157504e"
-version = "0.1.4"
-
 [[deps.FastBroadcast]]
 deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"]
 git-tree-sha1 = "ab1b34570bcdf272899062e1a56285a53ecaae08"
@@ -1099,12 +1049,6 @@ version = "2.2.1"
 deps = ["Artifacts", "Pkg"]
 uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3"
 
-[[deps.LevyArea]]
-deps = ["LinearAlgebra", "Random", "SpecialFunctions"]
-git-tree-sha1 = "56513a09b8e0ae6485f34401ea9e2f31357958ec"
-uuid = "2d8b4e74-eb68-11e8-0fb9-d5eb67b50637"
-version = "1.0.0"
-
 [[deps.LibCURL]]
 deps = ["LibCURL_jll", "MozillaCACerts_jll"]
 uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21"
@@ -1298,16 +1242,6 @@ version = "0.1.8"
 deps = ["Base64"]
 uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"
 
-[[deps.MatrixFactorizations]]
-deps = ["ArrayLayouts", "LinearAlgebra", "Printf", "Random"]
-git-tree-sha1 = "16a726dba99685d9e94c8d0a8f655383121fc608"
-uuid = "a3b82374-2e81-5b9e-98ce-41277c0e4c87"
-version = "3.0.1"
-weakdeps = ["BandedMatrices"]
-
-    [deps.MatrixFactorizations.extensions]
-    MatrixFactorizationsBandedMatricesExt = "BandedMatrices"
-
 [[deps.MaybeInplace]]
 deps = ["ArrayInterface", "LinearAlgebra", "MacroTools"]
 git-tree-sha1 = "54e2fdc38130c05b42be423e90da3bade29b74bd"
@@ -1396,12 +1330,6 @@ git-tree-sha1 = "a0b464d183da839699f4c79e7606d9d186ec172c"
 uuid = "d41bc354-129a-5804-8e4c-c37616107c6c"
 version = "7.8.3"
 
-[[deps.NLsolve]]
-deps = ["Distances", "LineSearches", "LinearAlgebra", "NLSolversBase", "Printf", "Reexport"]
-git-tree-sha1 = "019f12e9a1a7880459d0173c182e6a99365d7ac1"
-uuid = "2774e3e8-f4cf-5e23-947b-6d7e65073b56"
-version = "4.5.1"
-
 [[deps.NaNMath]]
 deps = ["OpenLibm_jll"]
 git-tree-sha1 = "0877504529a3e5c3343c6f8b4c0381e57e4387e4"
@@ -2298,18 +2226,6 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"]
     StatsFunsChainRulesCoreExt = "ChainRulesCore"
     StatsFunsInverseFunctionsExt = "InverseFunctions"
 
-[[deps.SteadyStateDiffEq]]
-deps = ["ConcreteStructs", "DiffEqBase", "DiffEqCallbacks", "LinearAlgebra", "Reexport", "SciMLBase"]
-git-tree-sha1 = "920acf6ae36c86f23969fea1d317e040dbfccf53"
-uuid = "9672c7b4-1e72-59bd-8a11-6ac3964bc41f"
-version = "2.4.1"
-
-[[deps.StochasticDiffEq]]
-deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqNoiseProcess", "DocStringExtensions", "FastPower", "FiniteDiff", "ForwardDiff", "JumpProcesses", "LevyArea", "LinearAlgebra", "Logging", "MuladdMacro", "NLsolve", "OrdinaryDiffEq", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"]
-git-tree-sha1 = "bf4bad73c80e058b1d53788ff520e10c8bad7c9d"
-uuid = "789caeaf-c7a9-5a7d-9973-96adeb23e2a0"
-version = "6.70.0"
-
 [[deps.StrideArraysCore]]
 deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"]
 git-tree-sha1 = "f35f6ab602df8413a50c4a25ca14de821e8605fb"
@@ -2331,18 +2247,6 @@ deps = ["Artifacts", "Libdl", "libblastrampoline_jll"]
 uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c"
 version = "7.2.1+1"
 
-[[deps.Sundials]]
-deps = ["CEnum", "DataStructures", "DiffEqBase", "Libdl", "LinearAlgebra", "Logging", "PrecompileTools", "Reexport", "SciMLBase", "SparseArrays", "Sundials_jll"]
-git-tree-sha1 = "e87efb31e5360cb223a151c2398903dc2faeb32b"
-uuid = "c3572dad-4567-51f8-b174-8c6c989267f4"
-version = "4.26.0"
-
-[[deps.Sundials_jll]]
-deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "SuiteSparse_jll", "libblastrampoline_jll"]
-git-tree-sha1 = "ba4d38faeb62de7ef47155ed321dce40a549c305"
-uuid = "fb77eaff-e24c-56d4-86b1-d163f2edb164"
-version = "5.2.2+0"
-
 [[deps.SymbolicIndexingInterface]]
 deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"]
 git-tree-sha1 = "4bc96df5d71515b1cb86dd626915f06f4c0d46f5"

benchmarks/DynamicalODE/Project.toml

@@ -1,8 +1,6 @@
 [deps]
-ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b"
 DiffEqCallbacks = "459566f4-90b8-5000-8ac3-15dfb0a30def"
 DiffEqPhysics = "055956cb-9e8b-5191-98cc-73ae4a59e68a"
-DifferentialEquations = "0c46a032-eb83-5123-abaf-570d42b7fbaa"
 Elliptic = "b305315f-e792-5b7a-8f41-49f472929428"
 LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"
@@ -15,7 +13,6 @@ Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
 TaylorIntegration = "92b13dbe-c966-51a2-8445-caca9f8a7d42"
 
 [compat]
-ADTypes = "1.9.0"
 DiffEqCallbacks = "2.13, 3, 4"
 DiffEqPhysics = "3.15.0"
 Elliptic = "1.0.1"

benchmarks/DynamicalODE/Quadrupole_boson_Hamiltonian_energy_conservation_benchmark.jmd

@@ -13,8 +13,6 @@ The aim of this benchmark is to see what happens with the energy error when high
 ```julia
 using OrdinaryDiffEq, Plots, DiffEqCallbacks, LinearAlgebra
 using TaylorIntegration
-using ADTypes
-using DifferentialEquations
 using ParameterizedFunctions
 using StaticArrays
 gr()