Updates

Author: ParamThakkar123

benchmarks/BayesianInference/DiffEqBayesFitzHughNagumo.jmd

@@ -64,7 +64,7 @@ priors = [truncated(Normal(1.0,0.5),0,1.5), truncated(Normal(1.0,0.5),0,1.5), tr
 #### Stan.jl backend
 
 ```julia
-@time bayesian_result_stan = stan_inference(prob_ode_fitzhughnagumo,t,data,priors; delta = 0.65, num_samples = 10_000, print_summary=false, vars=(DiffEqBayes.StanODEData(), InverseGamma(2, 3)))
+@time bayesian_result_stan = stan_inference(prob_ode_fitzhughnagumo , t, data, priors; num_samples = 10_000, vars=(StanODEData(), InverseGamma(2, 3)))
 ```
 
 ### Direct Turing.jl

benchmarks/BayesianInference/Project.toml

@@ -13,6 +13,7 @@ SciMLBenchmarks = "31c91b34-3c75-11e9-0341-95557aab0344"
 StanSample = "c1514b29-d3a0-5178-b312-660c88baa699"
 StaticArrays = "90137ffa-7385-5640-81b9-e52037218182"
 Turing = "fce5fe82-541a-59a6-adf8-730c64b5f9a0"
+CmdStan = "593b3428-ca2f-500c-ae53-031589ec8ddd"
 
 [compat]
 BenchmarkTools = "1.0"
@@ -21,6 +22,7 @@ DiffEqCallbacks = "4.0.0"
 Distributions = "0.25"
 DynamicHMC = "3.1"
 OrdinaryDiffEq = "6"
+CmdStan = "6.6.0"
 ParameterizedFunctions = "5.3"
 Plots = "1.4"
 RecursiveArrayTools = "3.27.1"