Skip to content

Commit 75b550a

Browse files
Bump LinearSolves
1 parent 0d44597 commit 75b550a

40 files changed

+57
-36
lines changed

benchmarks/AstroChem/Project.toml

Lines changed: 3 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -10,6 +10,7 @@ ODEInterfaceDiffEq = "09606e27-ecf5-54fc-bb29-004bd9f985bf"
1010
OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"
1111
OrdinaryDiffEqCore = "bbf590c4-e513-4bbe-9b18-05decba2e5d8"
1212
Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
13+
RecursiveFactorization = "f2c3362d-daeb-58d1-803e-2bc74f2840b4"
1314
Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4"
1415
Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7"
1516

@@ -18,12 +19,13 @@ BenchmarkTools = "1"
1819
Catalyst = "14"
1920
DiffEqDevTools = "2"
2021
LSODA = "0.7"
21-
LinearSolve = "2"
22+
LinearSolve = "3"
2223
NaNMath = "1"
2324
ODEInterface = "0.5"
2425
ODEInterfaceDiffEq = "3"
2526
OrdinaryDiffEq = "6.89"
2627
OrdinaryDiffEqCore = "1.9"
2728
Plots = "1"
29+
RecursiveFactorization = "0.2.23"
2830
Sundials = "4"
2931
Symbolics = "6"

benchmarks/AstroChem/astrochem.jmd

Lines changed: 1 addition & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -10,6 +10,7 @@ using Plots
1010
using Symbolics
1111
using DiffEqDevTools
1212
using Sundials, ODEInterface, ODEInterfaceDiffEq, LSODA
13+
using RecursiveFactorization
1314
```
1415

1516
## Without Temperature Dynamics

benchmarks/AstroChem/nelson.jmd

Lines changed: 1 addition & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -8,6 +8,7 @@ using OrdinaryDiffEq
88
using DiffEqDevTools, Plots
99
using Sundials, LSODA
1010
using ODEInterface, ODEInterfaceDiffEq
11+
using RecursiveFactorization
1112
```
1213

1314
The ODE function defined below models the reduced carbon-oxygen

benchmarks/Bio/BCR.jmd

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -17,7 +17,7 @@ Catalyst network model to ODEs.
1717
using DiffEqBase, OrdinaryDiffEq, Catalyst, ReactionNetworkImporters,
1818
Sundials, Plots, DiffEqDevTools, ODEInterface, ODEInterfaceDiffEq,
1919
LSODA, TimerOutputs, LinearAlgebra, ModelingToolkit, BenchmarkTools,
20-
LinearSolve
20+
LinearSolve, RecursiveFactorization
2121

2222
gr()
2323
datadir = joinpath(dirname(pathof(ReactionNetworkImporters)),"../data/bcr")

benchmarks/Bio/Bidkhori2012.jmd

Lines changed: 2 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -13,7 +13,8 @@ and the model was parsed to Julia are finally to ODEs using [ModelingToolkit](ht
1313
```julia
1414
using DiffEqBase, OrdinaryDiffEq, Catalyst, ReactionNetworkImporters,
1515
Sundials, Plots, DiffEqDevTools, ODEInterface, ODEInterfaceDiffEq,
16-
LSODA, TimerOutputs, LinearAlgebra, ModelingToolkit, BenchmarkTools, JLD2
16+
LSODA, TimerOutputs, LinearAlgebra, ModelingToolkit, BenchmarkTools, JLD2,
17+
RecursiveFactorization
1718

1819
gr()
1920

benchmarks/Bio/Project.toml

Lines changed: 3 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -12,6 +12,7 @@ ODEInterface = "54ca160b-1b9f-5127-a996-1867f4bc2a2c"
1212
ODEInterfaceDiffEq = "09606e27-ecf5-54fc-bb29-004bd9f985bf"
1313
OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"
1414
Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
15+
RecursiveFactorization = "f2c3362d-daeb-58d1-803e-2bc74f2840b4"
1516
ReactionNetworkImporters = "b4db0fb7-de2a-5028-82bf-5021f5cfa881"
1617
SciMLBenchmarks = "31c91b34-3c75-11e9-0341-95557aab0344"
1718
Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4"
@@ -25,13 +26,14 @@ DiffEqDevTools = "2.35"
2526
IncompleteLU = "0.2"
2627
JLD2 = "0.4, 0.5"
2728
LSODA = "0.7"
28-
LinearSolve = "1, 2"
29+
LinearSolve = "3"
2930
ModelingToolkit = "9"
3031
ODEInterface = "0.5"
3132
ODEInterfaceDiffEq = "3.8"
3233
OrdinaryDiffEq = "6"
3334
Plots = "1.10"
3435
ReactionNetworkImporters = "0.15"
36+
RecursiveFactorization = "0.2.23"
3537
SciMLBenchmarks = "0.1"
3638
Sundials = "4.4"
3739
TimerOutputs = "0.5"

benchmarks/Bio/egfr_net.jmd

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -18,7 +18,7 @@ Catalyst network model to ODEs.
1818
using DiffEqBase, OrdinaryDiffEq, Catalyst, ReactionNetworkImporters,
1919
Sundials, Plots, DiffEqDevTools, ODEInterface, ODEInterfaceDiffEq,
2020
LSODA, TimerOutputs, LinearAlgebra, ModelingToolkit, BenchmarkTools,
21-
LinearSolve
21+
LinearSolve, RecursiveFactorization
2222

2323
gr()
2424
const to = TimerOutput()

benchmarks/Bio/fceri_gamma2.jmd

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -17,7 +17,7 @@ Catalyst network model to ODEs.
1717
using DiffEqBase, OrdinaryDiffEq, Catalyst, ReactionNetworkImporters,
1818
Sundials, Plots, DiffEqDevTools, ODEInterface, ODEInterfaceDiffEq,
1919
LSODA, TimerOutputs, LinearAlgebra, ModelingToolkit, BenchmarkTools,
20-
LinearSolve
20+
LinearSolve, RecursiveFactorization
2121

2222
gr()
2323
const to = TimerOutput()

benchmarks/Bio/multisite2.jmd

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -16,7 +16,7 @@ Catalyst network model to ODEs.
1616
using DiffEqBase, OrdinaryDiffEq, Catalyst, ReactionNetworkImporters,
1717
Sundials, Plots, DiffEqDevTools, ODEInterface, ODEInterfaceDiffEq,
1818
LSODA, TimerOutputs, LinearAlgebra, ModelingToolkit, BenchmarkTools,
19-
LinearSolve
19+
LinearSolve, RecursiveFactorization
2020

2121
gr()
2222
const to = TimerOutput()

benchmarks/Bio/multistate.jmd

Lines changed: 2 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -15,7 +15,8 @@ Catalyst network model to ODEs.
1515
```julia
1616
using DiffEqBase, OrdinaryDiffEq, Catalyst, ReactionNetworkImporters,
1717
Sundials, Plots, DiffEqDevTools, ODEInterface, ODEInterfaceDiffEq,
18-
LSODA, TimerOutputs, LinearAlgebra, ModelingToolkit, BenchmarkTools
18+
LSODA, TimerOutputs, LinearAlgebra, ModelingToolkit, BenchmarkTools,
19+
RecursiveFactorization
1920

2021
gr()
2122
const to = TimerOutput()

0 commit comments

Comments
 (0)