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final bump?
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benchmarks/AstroChem/Manifest.toml

Lines changed: 82 additions & 35 deletions
Original file line numberDiff line numberDiff line change
@@ -152,6 +152,16 @@ version = "1.1.1"
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[deps.BlockArrays.weakdeps]
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BandedMatrices = "aae01518-5342-5314-be14-df237901396f"
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155+
[[deps.BracketingNonlinearSolve]]
156+
deps = ["CommonSolve", "ConcreteStructs", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"]
157+
git-tree-sha1 = "95cb19c37ea427617e9795655667712f03058d98"
158+
uuid = "70df07ce-3d50-431d-a3e7-ca6ddb60ac1e"
159+
version = "1.1.0"
160+
weakdeps = ["ForwardDiff"]
161+
162+
[deps.BracketingNonlinearSolve.extensions]
163+
BracketingNonlinearSolveForwardDiffExt = "ForwardDiff"
164+
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[[deps.Bzip2_jll]]
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deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
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git-tree-sha1 = "8873e196c2eb87962a2048b3b8e08946535864a1"
@@ -181,6 +191,11 @@ git-tree-sha1 = "009060c9a6168704143100f36ab08f06c2af4642"
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uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a"
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version = "1.18.2+1"
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194+
[[deps.Cassette]]
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git-tree-sha1 = "f8764df8d9d2aec2812f009a1ac39e46c33354b8"
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uuid = "7057c7e9-c182-5462-911a-8362d720325c"
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version = "0.3.14"
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[[deps.Catalyst]]
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deps = ["Combinatorics", "DataStructures", "DiffEqBase", "DocStringExtensions", "DynamicPolynomials", "DynamicQuantities", "Graphs", "JumpProcesses", "LaTeXStrings", "Latexify", "LinearAlgebra", "MacroTools", "ModelingToolkit", "Parameters", "Reexport", "Requires", "RuntimeGeneratedFunctions", "SciMLBase", "Setfield", "SparseArrays", "SymbolicUtils", "Symbolics", "Unitful"]
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git-tree-sha1 = "dafd059c1d80ba02006978cd05ea7264ff1f362e"
@@ -760,6 +775,12 @@ git-tree-sha1 = "1ed150b39aebcc805c26b93a8d0122c940f64ce2"
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uuid = "559328eb-81f9-559d-9380-de523a88c83c"
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version = "1.0.14+0"
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[[deps.FunctionProperties]]
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deps = ["Cassette", "DiffRules"]
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git-tree-sha1 = "bf7c740307eb0ee80e05d8aafbd0c5a901578398"
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uuid = "f62d2435-5019-4c03-9749-2d4c77af0cbc"
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version = "0.1.2"
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[[deps.FunctionWrappers]]
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git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e"
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uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e"
@@ -1357,32 +1378,78 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"
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version = "1.2.0"
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[[deps.NonlinearSolve]]
1360-
deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "DifferentiationInterface", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "LazyArrays", "LineSearch", "LineSearches", "LinearAlgebra", "LinearSolve", "MaybeInplace", "PrecompileTools", "Preferences", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLJacobianOperators", "SciMLOperators", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SparseConnectivityTracer", "SparseMatrixColorings", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"]
1361-
git-tree-sha1 = "4d8944f32db2b07a2bdf8477e878bcb9c9ea2308"
1381+
deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DiffEqBase", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "NonlinearSolveQuasiNewton", "NonlinearSolveSpectralMethods", "PrecompileTools", "Preferences", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseMatrixColorings", "StaticArraysCore", "SymbolicIndexingInterface"]
1382+
git-tree-sha1 = "22f3efdd47bd18d8a26bd559fff254e6b21000fd"
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uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec"
1363-
version = "3.15.1"
1384+
version = "4.1.0"
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13651386
[deps.NonlinearSolve.extensions]
1366-
NonlinearSolveBandedMatricesExt = "BandedMatrices"
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NonlinearSolveFastLevenbergMarquardtExt = "FastLevenbergMarquardt"
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NonlinearSolveFixedPointAccelerationExt = "FixedPointAcceleration"
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NonlinearSolveLeastSquaresOptimExt = "LeastSquaresOptim"
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NonlinearSolveMINPACKExt = "MINPACK"
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NonlinearSolveNLSolversExt = "NLSolvers"
1372-
NonlinearSolveNLsolveExt = "NLsolve"
1392+
NonlinearSolveNLsolveExt = ["NLsolve", "LineSearches"]
1393+
NonlinearSolvePETScExt = ["PETSc", "MPI"]
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NonlinearSolveSIAMFANLEquationsExt = "SIAMFANLEquations"
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NonlinearSolveSpeedMappingExt = "SpeedMapping"
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NonlinearSolveSundialsExt = "Sundials"
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13761398
[deps.NonlinearSolve.weakdeps]
1377-
BandedMatrices = "aae01518-5342-5314-be14-df237901396f"
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FastLevenbergMarquardt = "7a0df574-e128-4d35-8cbd-3d84502bf7ce"
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FixedPointAcceleration = "817d07cb-a79a-5c30-9a31-890123675176"
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LeastSquaresOptim = "0fc2ff8b-aaa3-5acd-a817-1944a5e08891"
1402+
LineSearches = "d3d80556-e9d4-5f37-9878-2ab0fcc64255"
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MINPACK = "4854310b-de5a-5eb6-a2a5-c1dee2bd17f9"
1404+
MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195"
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NLSolvers = "337daf1e-9722-11e9-073e-8b9effe078ba"
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NLsolve = "2774e3e8-f4cf-5e23-947b-6d7e65073b56"
1407+
PETSc = "ace2c81b-2b5f-4b1e-a30d-d662738edfe0"
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SIAMFANLEquations = "084e46ad-d928-497d-ad5e-07fa361a48c4"
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SpeedMapping = "f1835b91-879b-4a3f-a438-e4baacf14412"
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Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4"
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1412+
[[deps.NonlinearSolveBase]]
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deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "FunctionProperties", "LinearAlgebra", "Markdown", "MaybeInplace", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLOperators", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"]
1414+
git-tree-sha1 = "1589ef8aac99a21d132adf1ec5cbe6ef651760ff"
1415+
uuid = "be0214bd-f91f-a760-ac4e-3421ce2b2da0"
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version = "1.3.1"
1417+
1418+
[deps.NonlinearSolveBase.extensions]
1419+
NonlinearSolveBaseBandedMatricesExt = "BandedMatrices"
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NonlinearSolveBaseDiffEqBaseExt = "DiffEqBase"
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NonlinearSolveBaseForwardDiffExt = "ForwardDiff"
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NonlinearSolveBaseLineSearchExt = "LineSearch"
1423+
NonlinearSolveBaseLinearSolveExt = "LinearSolve"
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NonlinearSolveBaseSparseArraysExt = "SparseArrays"
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NonlinearSolveBaseSparseMatrixColoringsExt = "SparseMatrixColorings"
1426+
1427+
[deps.NonlinearSolveBase.weakdeps]
1428+
BandedMatrices = "aae01518-5342-5314-be14-df237901396f"
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DiffEqBase = "2b5f629d-d688-5b77-993f-72d75c75574e"
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ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210"
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LineSearch = "87fe0de2-c867-4266-b59a-2f0a94fc965b"
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LinearSolve = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae"
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SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
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SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35"
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[[deps.NonlinearSolveFirstOrder]]
1437+
deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConcreteStructs", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLJacobianOperators", "Setfield", "StaticArraysCore"]
1438+
git-tree-sha1 = "dc8535cecb0f9d978019e44b7144b9e84ab85424"
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uuid = "5959db7a-ea39-4486-b5fe-2dd0bf03d60d"
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version = "1.0.0"
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[[deps.NonlinearSolveQuasiNewton]]
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deps = ["ArrayInterface", "CommonSolve", "ConcreteStructs", "DiffEqBase", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLOperators", "StaticArraysCore"]
1444+
git-tree-sha1 = "066d4940938f4bb5fd1ce146e61a373f40b89d31"
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uuid = "9a2c21bd-3a47-402d-9113-8faf9a0ee114"
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version = "1.0.0"
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[[deps.NonlinearSolveSpectralMethods]]
1449+
deps = ["CommonSolve", "ConcreteStructs", "DiffEqBase", "LineSearch", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"]
1450+
git-tree-sha1 = "cc97c44e396ab820401c8c404bc1fd18d4c884bd"
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uuid = "26075421-4e9a-44e1-8bd1-420ed7ad02b2"
1452+
version = "1.0.0"
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[[deps.ODEInterface]]
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deps = ["Dates", "Libdl", "LinearAlgebra", "Markdown", "ODEInterface_jll", "Unicode"]
@@ -1470,9 +1537,9 @@ version = "1.6.3"
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[[deps.OrdinaryDiffEq]]
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deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "EnumX", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FillArrays", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "MacroTools", "MuladdMacro", "NonlinearSolve", "OrdinaryDiffEqAdamsBashforthMoulton", "OrdinaryDiffEqBDF", "OrdinaryDiffEqCore", "OrdinaryDiffEqDefault", "OrdinaryDiffEqDifferentiation", "OrdinaryDiffEqExplicitRK", "OrdinaryDiffEqExponentialRK", "OrdinaryDiffEqExtrapolation", "OrdinaryDiffEqFIRK", "OrdinaryDiffEqFeagin", "OrdinaryDiffEqFunctionMap", "OrdinaryDiffEqHighOrderRK", "OrdinaryDiffEqIMEXMultistep", "OrdinaryDiffEqLinear", "OrdinaryDiffEqLowOrderRK", "OrdinaryDiffEqLowStorageRK", "OrdinaryDiffEqNonlinearSolve", "OrdinaryDiffEqNordsieck", "OrdinaryDiffEqPDIRK", "OrdinaryDiffEqPRK", "OrdinaryDiffEqQPRK", "OrdinaryDiffEqRKN", "OrdinaryDiffEqRosenbrock", "OrdinaryDiffEqSDIRK", "OrdinaryDiffEqSSPRK", "OrdinaryDiffEqStabilizedIRK", "OrdinaryDiffEqStabilizedRK", "OrdinaryDiffEqSymplecticRK", "OrdinaryDiffEqTsit5", "OrdinaryDiffEqVerner", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "SparseDiffTools", "Static", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"]
1473-
git-tree-sha1 = "cd892f12371c287dc50d6ad3af075b088b6f2d48"
1540+
git-tree-sha1 = "aa3897f89be34bdfd86472f5345d5f1f6576bcc5"
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uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"
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version = "6.89.0"
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version = "6.90.0"
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[[deps.OrdinaryDiffEqAdamsBashforthMoulton]]
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deps = ["ADTypes", "DiffEqBase", "FastBroadcast", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqLowOrderRK", "Polyester", "RecursiveArrayTools", "Reexport", "Static"]
@@ -1576,9 +1643,9 @@ version = "1.2.1"
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[[deps.OrdinaryDiffEqNonlinearSolve]]
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deps = ["ADTypes", "ArrayInterface", "DiffEqBase", "FastBroadcast", "FastClosures", "ForwardDiff", "LinearAlgebra", "LinearSolve", "MuladdMacro", "NonlinearSolve", "OrdinaryDiffEqCore", "OrdinaryDiffEqDifferentiation", "PreallocationTools", "RecursiveArrayTools", "SciMLBase", "SciMLOperators", "SciMLStructures", "SimpleNonlinearSolve", "StaticArrays"]
1579-
git-tree-sha1 = "e4be6539f4aaae8db1f29fcfdf6ef817df1f25cf"
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git-tree-sha1 = "5e1b316555fa95892edc13f6a429ac784d0be4dd"
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uuid = "127b3ac7-2247-4354-8eb6-78cf4e7c58e8"
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version = "1.2.2"
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version = "1.2.4"
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[[deps.OrdinaryDiffEqNordsieck]]
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deps = ["DiffEqBase", "FastBroadcast", "LinearAlgebra", "MuladdMacro", "OrdinaryDiffEqCore", "OrdinaryDiffEqTsit5", "Polyester", "RecursiveArrayTools", "Reexport", "Static"]
@@ -2071,22 +2138,22 @@ uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7"
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version = "1.2.0"
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[[deps.SimpleNonlinearSolve]]
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deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "DiffResults", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "Reexport", "SciMLBase", "Setfield", "StaticArraysCore"]
2075-
git-tree-sha1 = "44021f3efc023be3871195d8ad98b865001a2fa1"
2141+
deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "Setfield", "StaticArraysCore"]
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git-tree-sha1 = "f7e2042e0b68c6bb19a0a1594839792737f51d84"
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uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7"
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version = "1.12.3"
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version = "2.0.0"
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[deps.SimpleNonlinearSolve.extensions]
20802147
SimpleNonlinearSolveChainRulesCoreExt = "ChainRulesCore"
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SimpleNonlinearSolveDiffEqBaseExt = "DiffEqBase"
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SimpleNonlinearSolveReverseDiffExt = "ReverseDiff"
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SimpleNonlinearSolveTrackerExt = "Tracker"
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SimpleNonlinearSolveZygoteExt = "Zygote"
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[deps.SimpleNonlinearSolve.weakdeps]
20862153
ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
2154+
DiffEqBase = "2b5f629d-d688-5b77-993f-72d75c75574e"
20872155
ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267"
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Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c"
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Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f"
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[[deps.SimpleTraits]]
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deps = ["InteractiveUtils", "MacroTools"]
@@ -2113,26 +2180,6 @@ deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"]
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uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
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version = "1.10.0"
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2116-
[[deps.SparseConnectivityTracer]]
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deps = ["ADTypes", "DocStringExtensions", "FillArrays", "LinearAlgebra", "Random", "SparseArrays"]
2118-
git-tree-sha1 = "6914df6005bab9940e2a96879a97a43e1fb1ce78"
2119-
uuid = "9f842d2f-2579-4b1d-911e-f412cf18a3f5"
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version = "0.6.8"
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[deps.SparseConnectivityTracer.extensions]
2123-
SparseConnectivityTracerDataInterpolationsExt = "DataInterpolations"
2124-
SparseConnectivityTracerLogExpFunctionsExt = "LogExpFunctions"
2125-
SparseConnectivityTracerNNlibExt = "NNlib"
2126-
SparseConnectivityTracerNaNMathExt = "NaNMath"
2127-
SparseConnectivityTracerSpecialFunctionsExt = "SpecialFunctions"
2128-
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[deps.SparseConnectivityTracer.weakdeps]
2130-
DataInterpolations = "82cc6244-b520-54b8-b5a6-8a565e85f1d0"
2131-
LogExpFunctions = "2ab3a3ac-af41-5b50-aa03-7779005ae688"
2132-
NNlib = "872c559c-99b0-510c-b3b7-b6c96a88d5cd"
2133-
NaNMath = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3"
2134-
SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b"
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[[deps.SparseDiffTools]]
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deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "UnPack", "VertexSafeGraphs"]
21382185
git-tree-sha1 = "b906758c107b049b6b71599b9f928d9b14e5554a"

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