up

Author: vyudu

benchmarks/Jumps/EGFR_Benchmark.jmd

@@ -19,7 +19,7 @@ function benchmark_and_bar_plot(model, end_time, algs)
     benchmarks = Vector{BenchmarkTools.Trial}(undef, length(algs))
     for (i, alg) in enumerate(algs)
         alg_name = alg_names[i]
-        println("benchmarking $alg_name")
+        println("Benchmarking $alg_name")
         dprob = DiscreteProblem(complete(model.rn), model.u0, (0., end_time), model.p)
         dprob = remake(dprob,u0 = Int64.(dprob.u0))
         jprob = JumpProblem(complete(model.rn), dprob, alg; rng, save_positions = (false, false))

benchmarks/Jumps/Spatial_Signaling_Sanft.jmd

@@ -213,7 +213,7 @@ domain length of `12` μm, analogous to Fig. 6 in [^1]:
 bench_dict = Dict{Tuple{String, Int}, BenchmarkTools.Trial}()
 algs = [NSM(), DirectCRDirect()]
 Nv = [20, 30, 40, 50, 60, 90, 120, 240, 360]
-end_times = 200.0 * ones(length(Nv))
+end_times = 20000.0 * ones(length(Nv))
 domain_len = 12.0
 benchmark_and_save!(bench_dict, end_times, Nv, algs, domain_len)
 ```