update DiffEqJump to JumpProcesses

isaacsas · isaacsas · commit 9abadc98c1b7 · 2022-06-29T09:04:35.000-04:00
diff --git a/.gitignore b/.gitignore
@@ -2,3 +2,4 @@
 *.jl.*.cov
 *.jl.mem
 Manifest.toml
+.vscode/
diff --git a/Project.toml b/Project.toml
@@ -8,12 +8,12 @@ Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"
 ArrayInterface = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9"
 DataStructures = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"
 DiffEqBase = "2b5f629d-d688-5b77-993f-72d75c75574e"
-DiffEqJump = "c894b116-72e5-5b58-be3c-e6d8d4ac2b12"
 DiffEqNoiseProcess = "77a26b50-5914-5dd7-bc55-306e6241c503"
 DocStringExtensions = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae"
 FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b"
 FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41"
 ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210"
+JumpProcesses = "ccbc3e58-028d-4f4c-8cd5-9ae44345cda5"
 LevyArea = "2d8b4e74-eb68-11e8-0fb9-d5eb67b50637"
 LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 Logging = "56ddb016-857b-54e1-b83d-db4d58db5568"
@@ -35,7 +35,7 @@ Adapt = "3"
 ArrayInterface = "2.4, 3.0, 4, 5, 6"
 DataStructures = "0.18"
 DiffEqBase = "6.19"
-DiffEqJump = "6.7.4, 7, 8"
+JumpProcesses = "9"
 DiffEqNoiseProcess = "5.0.0"
 DocStringExtensions = "0.8, 0.9"
 FillArrays = "0.6, 0.7, 0.8, 0.9, 0.10, 0.11, 0.12, 0.13"
diff --git a/src/StochasticDiffEq.jl b/src/StochasticDiffEq.jl
@@ -69,8 +69,8 @@ using DocStringExtensions
 
   const CompiledFloats = Union{Float32,Float64}
 
-  import DiffEqJump
-  import DiffEqJump: JumpProblem
+  import JumpProcesses
+  import JumpProcesses: JumpProblem
 
   import Base.Threads
   @static if VERSION < v"1.3"
diff --git a/src/solve.jl b/src/solve.jl
@@ -80,9 +80,9 @@ function DiffEqBase.__init(
 
   if typeof(_prob) <: JumpProblem
     if !alias_jumps
-      _prob = DiffEqJump.resetted_jump_problem(_prob, _seed)
+      _prob = JumpProcesses.resetted_jump_problem(_prob, _seed)
     elseif _seed !== 0
-      DiffEqJump.reset_jump_problem!(_prob, _seed)
+      JumpProcesses.reset_jump_problem!(_prob, _seed)
     end
   end
 
diff --git a/test/multithreaded_jump_test.jl b/test/multithreaded_jump_test.jl
@@ -1,4 +1,4 @@
-using DiffEqJump, StochasticDiffEq, Test
+using JumpProcesses, StochasticDiffEq, Test
 
 # Requires threads to be effective
 # https://github.com/SciML/DifferentialEquations.jl/issues/854
diff --git a/test/tau_leaping.jl b/test/tau_leaping.jl
@@ -1,4 +1,4 @@
-using StochasticDiffEq, DiffEqJump, DiffEqBase, Statistics
+using StochasticDiffEq, JumpProcesses, DiffEqBase, Statistics
 using Test, LinearAlgebra
 
 function regular_rate(out,u,p,t)

Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,4 @@`
`1`		`-using DiffEqJump, StochasticDiffEq, Test`
	`1`	`+using JumpProcesses, StochasticDiffEq, Test`
`2`	`2`
`3`	`3`	`# Requires threads to be effective`
`4`	`4`	`# https://github.com/SciML/DifferentialEquations.jl/issues/854`
Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,4 @@`
`1`		`-using StochasticDiffEq, DiffEqJump, DiffEqBase, Statistics`
	`1`	`+using StochasticDiffEq, JumpProcesses, DiffEqBase, Statistics`
`2`	`2`	`using Test, LinearAlgebra`
`3`	`3`
`4`	`4`	`function regular_rate(out,u,p,t)`