|
13 | 13 | volume = {7}, |
14 | 14 | number = {1}, |
15 | 15 | pages = {194-235} |
16 | | -}</code></pre><h2 id="Feature-Summary"><a class="docs-heading-anchor" href="#Feature-Summary">Feature Summary</a><a id="Feature-Summary-1"></a><a class="docs-heading-anchor-permalink" href="#Feature-Summary" title="Permalink"></a></h2><p><code>StructuralIdentifiability.jl</code> can assess local and global identifiability of ODE models. In addition to these straightforward identifiability queries on individual parameters, the package can distinguish between single- and multi-experiment identifiability.</p><h2 id="Feature-List"><a class="docs-heading-anchor" href="#Feature-List">Feature List</a><a id="Feature-List-1"></a><a class="docs-heading-anchor-permalink" href="#Feature-List" title="Permalink"></a></h2><ul><li>Local identifiability checks</li><li>Global identifiability checks</li><li>Assessment of identifiable functions of parameters and states</li><li>Model reparametrization (experimental)</li></ul><h2 id="External-tutorials"><a class="docs-heading-anchor" href="#External-tutorials">External tutorials</a><a id="External-tutorials-1"></a><a class="docs-heading-anchor-permalink" href="#External-tutorials" title="Permalink"></a></h2><p>A <a href="https://arxiv.org/abs/2505.10517">tutorial paper</a> describes some of the functionality (identifiability assessment and finding identifiable functions) in the context of epidemiological modeling (tested with the version 0.5.15 of the package).</p><h2 id="Contributing"><a class="docs-heading-anchor" href="#Contributing">Contributing</a><a id="Contributing-1"></a><a class="docs-heading-anchor-permalink" href="#Contributing" title="Permalink"></a></h2><ul><li><p>Please refer to the <a href="https://github.com/SciML/ColPrac/blob/master/README.md">SciML ColPrac: Contributor's Guide on Collaborative Practices for Community Packages</a> for guidance on PRs, issues, and other matters relating to contributing to StructuralIdentifiability.</p></li><li><p>There are a few community forums:</p><ul><li>The #diffeq-bridged channel in the <a href="https://julialang.org/slack/">Julia Slack</a></li><li><a href="https://gitter.im/JuliaDiffEq/Lobby">JuliaDiffEq</a> on Gitter</li><li>On the Julia Discourse forums</li><li>See also <a href="https://sciml.ai/community/">SciML Community page</a></li></ul></li></ul><h2 id="Reproducibility"><a class="docs-heading-anchor" href="#Reproducibility">Reproducibility</a><a id="Reproducibility-1"></a><a class="docs-heading-anchor-permalink" href="#Reproducibility" title="Permalink"></a></h2><details><summary>The documentation of this SciML package was built using these direct dependencies,</summary><pre class="documenter-example-output"><code class="nohighlight hljs ansi">Status `~/work/StructuralIdentifiability.jl/StructuralIdentifiability.jl/docs/Project.toml` |
| 16 | +}</code></pre><h2 id="Feature-Summary"><a class="docs-heading-anchor" href="#Feature-Summary">Feature Summary</a><a id="Feature-Summary-1"></a><a class="docs-heading-anchor-permalink" href="#Feature-Summary" title="Permalink"></a></h2><p><code>StructuralIdentifiability.jl</code> can assess local and global identifiability of ODE models. In addition to these straightforward identifiability queries on individual parameters, the package can distinguish between single- and multi-experiment identifiability.</p><h2 id="Feature-List"><a class="docs-heading-anchor" href="#Feature-List">Feature List</a><a id="Feature-List-1"></a><a class="docs-heading-anchor-permalink" href="#Feature-List" title="Permalink"></a></h2><ul><li>Local identifiability checks</li><li>Global identifiability checks</li><li>Assessment of identifiable functions of parameters and states</li><li>Model reparametrization (experimental)</li></ul><h2 id="External-tutorials"><a class="docs-heading-anchor" href="#External-tutorials">External tutorials</a><a id="External-tutorials-1"></a><a class="docs-heading-anchor-permalink" href="#External-tutorials" title="Permalink"></a></h2><p>A <a href="https://arxiv.org/abs/2505.10517">tutorial paper</a> describes some of the functionality (identifiability assessment and finding identifiable functions) in the context of epidemiological modeling (tested with the version 0.5.15 of the package).</p><h2 id="Contributing"><a class="docs-heading-anchor" href="#Contributing">Contributing</a><a id="Contributing-1"></a><a class="docs-heading-anchor-permalink" href="#Contributing" title="Permalink"></a></h2><ul><li><p>Please refer to the <a href="https://github.com/SciML/ColPrac/blob/master/README.md">SciML ColPrac: Contributor's Guide on Collaborative Practices for Community Packages</a> for guidance on PRs, issues, and other matters relating to contributing to StructuralIdentifiability.</p></li><li><p>There are a few community forums:</p><ul><li>The #diffeq-bridged channel in the <a href="https://julialang.org/slack/">Julia Slack</a></li><li><a href="https://gitter.im/JuliaDiffEq/Lobby">JuliaDiffEq</a> on Gitter</li><li>On the Julia Discourse forums</li><li>See also <a href="https://sciml.ai/community/">SciML Community page</a></li></ul></li></ul><h2 id="Reproducibility"><a class="docs-heading-anchor" href="#Reproducibility">Reproducibility</a><a id="Reproducibility-1"></a><a class="docs-heading-anchor-permalink" href="#Reproducibility" title="Permalink"></a></h2><details><summary>The documentation of this SciML package was built using these direct dependencies,</summary><pre class="documenter-example-output"><code class="nohighlight hljs ansi">Status `~/github-runners/deepsea4-26/_work/StructuralIdentifiability.jl/StructuralIdentifiability.jl/docs/Project.toml` |
17 | 17 | [6e4b80f9] BenchmarkTools v1.6.3 |
18 | 18 | [e30172f5] Documenter v1.16.1 |
19 | 19 | [7771a370] ModelingToolkitBase v1.2.0 |
20 | | - [220ca800] StructuralIdentifiability v0.5.17 `~/work/StructuralIdentifiability.jl/StructuralIdentifiability.jl`</code></pre></details><details><summary>and using this machine and Julia version.</summary><pre class="documenter-example-output"><code class="nohighlight hljs ansi">Julia Version 1.12.3 |
| 20 | + [220ca800] StructuralIdentifiability v0.5.17 `~/github-runners/deepsea4-26/_work/StructuralIdentifiability.jl/StructuralIdentifiability.jl`</code></pre></details><details><summary>and using this machine and Julia version.</summary><pre class="documenter-example-output"><code class="nohighlight hljs ansi">Julia Version 1.12.3 |
21 | 21 | Commit 966d0af0fdf (2025-12-15 11:20 UTC) |
22 | 22 | Build Info: |
23 | 23 | Official https://julialang.org release |
24 | 24 | Platform Info: |
25 | 25 | OS: Linux (x86_64-linux-gnu) |
26 | | - CPU: 4 × AMD EPYC 7763 64-Core Processor |
| 26 | + CPU: 128 × AMD EPYC 7513 32-Core Processor |
27 | 27 | WORD_SIZE: 64 |
28 | 28 | LLVM: libLLVM-18.1.7 (ORCJIT, znver3) |
29 | 29 | GC: Built with stock GC |
30 | | -Threads: 1 default, 1 interactive, 1 GC (on 4 virtual cores)</code></pre></details><details><summary>A more complete overview of all dependencies and their versions is also provided.</summary><pre class="documenter-example-output"><code class="nohighlight hljs ansi">Status `~/work/StructuralIdentifiability.jl/StructuralIdentifiability.jl/docs/Manifest.toml` |
| 30 | +Threads: 1 default, 1 interactive, 1 GC (on 128 virtual cores) |
| 31 | +Environment: |
| 32 | + JULIA_DEPOT_PATH = /home/chrisrackauckas/github-runners/deepsea4-26/.julia:/home/chrisrackauckas/.julia</code></pre></details><details><summary>A more complete overview of all dependencies and their versions is also provided.</summary><pre class="documenter-example-output"><code class="nohighlight hljs ansi">Status `~/github-runners/deepsea4-26/_work/StructuralIdentifiability.jl/StructuralIdentifiability.jl/docs/Manifest.toml` |
31 | 33 | [47edcb42] ADTypes v1.20.0 |
32 | 34 | [a4c015fc] ANSIColoredPrinters v0.0.1 |
33 | 35 | [c3fe647b] AbstractAlgebra v0.47.6 |
|
158 | 160 | [10745b16] Statistics v1.11.1 |
159 | 161 | [7792a7ef] StrideArraysCore v0.5.8 |
160 | 162 | [ec057cc2] StructUtils v2.6.0 |
161 | | - [220ca800] StructuralIdentifiability v0.5.17 `~/work/StructuralIdentifiability.jl/StructuralIdentifiability.jl` |
| 163 | + [220ca800] StructuralIdentifiability v0.5.17 `~/github-runners/deepsea4-26/_work/StructuralIdentifiability.jl/StructuralIdentifiability.jl` |
162 | 164 | [2efcf032] SymbolicIndexingInterface v0.3.46 |
163 | 165 | [19f23fe9] SymbolicLimits v0.2.4 |
164 | 166 | [d1185830] SymbolicUtils v4.9.1 |
|
230 | 232 | [3f19e933] p7zip_jll v17.7.0+0 |
231 | 233 | Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`</code></pre></details>You can also download the |
232 | 234 | <a href="">manifest</a> file and the |
233 | | -<a href="">project</a> file.</article><nav class="docs-footer"><a class="docs-footer-nextpage" href="tutorials/creating_ode/">Creating ODE System »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.16.1 on <span class="colophon-date" title="Thursday 18 December 2025 11:22">Thursday 18 December 2025</span>. Using Julia version 1.12.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html> |
| 235 | +<a href="">project</a> file.</article><nav class="docs-footer"><a class="docs-footer-nextpage" href="tutorials/creating_ode/">Creating ODE System »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.16.1 on <span class="colophon-date" title="Thursday 18 December 2025 13:18">Thursday 18 December 2025</span>. Using Julia version 1.12.3.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html> |
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