build based on 4b1c409

Author: Documenter.jl

dev/.documenter-siteinfo.json

@@ -1 +1 @@
-{"documenter":{"julia_version":"1.12.4","generation_timestamp":"2026-01-15T07:16:12","documenter_version":"1.16.1"}}
+{"documenter":{"julia_version":"1.12.4","generation_timestamp":"2026-01-20T08:52:58","documenter_version":"1.16.1"}}

dev/assets/Manifest.toml

@@ -16,16 +16,16 @@
 }</code></pre><h2 id="Feature-Summary"><a class="docs-heading-anchor" href="#Feature-Summary">Feature Summary</a><a id="Feature-Summary-1"></a><a class="docs-heading-anchor-permalink" href="#Feature-Summary" title="Permalink"></a></h2><p><code>StructuralIdentifiability.jl</code> can assess local and global identifiability of ODE models. In addition to these straightforward identifiability queries on individual parameters, the package can distinguish between single- and multi-experiment identifiability.</p><h2 id="Feature-List"><a class="docs-heading-anchor" href="#Feature-List">Feature List</a><a id="Feature-List-1"></a><a class="docs-heading-anchor-permalink" href="#Feature-List" title="Permalink"></a></h2><ul><li>Local identifiability checks</li><li>Global identifiability checks</li><li>Assessment of identifiable functions of parameters and states</li><li>Model reparametrization (experimental)</li></ul><h2 id="External-tutorials"><a class="docs-heading-anchor" href="#External-tutorials">External tutorials</a><a id="External-tutorials-1"></a><a class="docs-heading-anchor-permalink" href="#External-tutorials" title="Permalink"></a></h2><p>A <a href="https://arxiv.org/abs/2505.10517">tutorial paper</a> describes some of the functionality (identifiability assessment and finding identifiable functions) in the context of epidemiological modeling (tested with the version 0.5.15 of the package).</p><h2 id="Contributing"><a class="docs-heading-anchor" href="#Contributing">Contributing</a><a id="Contributing-1"></a><a class="docs-heading-anchor-permalink" href="#Contributing" title="Permalink"></a></h2><ul><li><p>Please refer to the <a href="https://github.com/SciML/ColPrac/blob/master/README.md">SciML ColPrac: Contributor&#39;s Guide on Collaborative Practices for Community Packages</a> for guidance on PRs, issues, and other matters relating to contributing to StructuralIdentifiability.</p></li><li><p>There are a few community forums:</p><ul><li>The #diffeq-bridged channel in the <a href="https://julialang.org/slack/">Julia Slack</a></li><li><a href="https://gitter.im/JuliaDiffEq/Lobby">JuliaDiffEq</a> on Gitter</li><li>On the Julia Discourse forums</li><li>See also <a href="https://sciml.ai/community/">SciML Community page</a></li></ul></li></ul><h2 id="Reproducibility"><a class="docs-heading-anchor" href="#Reproducibility">Reproducibility</a><a id="Reproducibility-1"></a><a class="docs-heading-anchor-permalink" href="#Reproducibility" title="Permalink"></a></h2><details><summary>The documentation of this SciML package was built using these direct dependencies,</summary><pre class="documenter-example-output"><code class="nohighlight hljs ansi">Status `~/work/StructuralIdentifiability.jl/StructuralIdentifiability.jl/docs/Project.toml`
   [6e4b80f9] BenchmarkTools v1.6.3
   [e30172f5] Documenter v1.16.1
-  [7771a370] ModelingToolkitBase v1.6.0
+  [7771a370] ModelingToolkitBase v1.6.2
   [220ca800] StructuralIdentifiability v0.5.18 `~/work/StructuralIdentifiability.jl/StructuralIdentifiability.jl`</code></pre></details><details><summary>and using this machine and Julia version.</summary><pre class="documenter-example-output"><code class="nohighlight hljs ansi">Julia Version 1.12.4
 Commit 01a2eadb047 (2026-01-06 16:56 UTC)
 Build Info:
   Official https://julialang.org release
 Platform Info:
   OS: Linux (x86_64-linux-gnu)
-  CPU: 4 × Intel(R) Xeon(R) Platinum 8370C CPU @ 2.80GHz
+  CPU: 4 × AMD EPYC 7763 64-Core Processor
   WORD_SIZE: 64
-  LLVM: libLLVM-18.1.7 (ORCJIT, icelake-server)
+  LLVM: libLLVM-18.1.7 (ORCJIT, znver3)
   GC: Built with stock GC
 Threads: 1 default, 1 interactive, 1 GC (on 4 virtual cores)</code></pre></details><details><summary>A more complete overview of all dependencies and their versions is also provided.</summary><pre class="documenter-example-output"><code class="nohighlight hljs ansi">Status `~/work/StructuralIdentifiability.jl/StructuralIdentifiability.jl/docs/Manifest.toml`
   [47edcb42] ADTypes v1.21.0
@@ -46,6 +46,7 @@
   [8e7c35d0] BlockArrays v1.9.3
   [70df07ce] BracketingNonlinearSolve v1.6.2
   [2a0fbf3d] CPUSummary v0.2.7
+  [d360d2e6] ChainRulesCore v1.26.0
   [fb6a15b2] CloseOpenIntervals v0.1.13
   [944b1d66] CodecZlib v0.7.8
 ⌅ [861a8166] Combinatorics v1.0.2
@@ -59,7 +60,7 @@
   [187b0558] ConstructionBase v1.6.0
   [adafc99b] CpuId v0.3.1
   [864edb3b] DataStructures v0.19.3
-  [2b5f629d] DiffEqBase v6.197.0
+  [2b5f629d] DiffEqBase v6.199.0
   [459566f4] DiffEqCallbacks v4.12.0
   [163ba53b] DiffResults v1.1.0
   [b552c78f] DiffRules v1.15.1
@@ -75,7 +76,7 @@
   [7034ab61] FastBroadcast v0.3.5
   [9aa1b823] FastClosures v0.3.2
   [a4df4552] FastPower v1.3.0
-  [1a297f60] FillArrays v1.15.0
+  [1a297f60] FillArrays v1.16.0
   [64ca27bc] FindFirstFunctions v1.7.0
   [6a86dc24] FiniteDiff v2.29.0
   [f6369f11] ForwardDiff v1.3.1
@@ -84,10 +85,10 @@
   [46192b85] GPUArraysCore v0.2.0
   [d7ba0133] Git v1.5.0
   [86223c79] Graphs v1.13.3
-  [0b43b601] Groebner v0.10.1
+  [0b43b601] Groebner v0.10.2
   [b5f81e59] IOCapture v1.0.0
   [615f187c] IfElse v0.1.1
-  [3263718b] ImplicitDiscreteSolve v1.5.0
+  [3263718b] ImplicitDiscreteSolve v1.6.0
   [d25df0c9] Inflate v0.1.5
   [18e54dd8] IntegerMathUtils v0.1.3
   [8197267c] IntervalSets v0.7.13
@@ -98,28 +99,31 @@
   [692b3bcd] JLLWrappers v1.7.1
   [682c06a0] JSON v1.4.0
   [ae98c720] Jieko v0.2.1
-  [ccbc3e58] JumpProcesses v9.20.0
+  [ccbc3e58] JumpProcesses v9.21.0
+  [ba0b0d4f] Krylov v0.10.4
   [10f19ff3] LayoutPointers v0.1.17
   [0e77f7df] LazilyInitializedFields v1.3.0
   [87fe0de2] LineSearch v0.1.6
+  [7ed4a6bd] LinearSolve v3.57.0
   [2ab3a3ac] LogExpFunctions v0.3.29
   [e6f89c97] LoggingExtras v1.2.0
   [1914dd2f] MacroTools v0.5.16
   [d125e4d3] ManualMemory v0.1.8
   [d0879d2d] MarkdownAST v0.1.2
   [bb5d69b7] MaybeInplace v0.1.4
-  [7771a370] ModelingToolkitBase v1.6.0
+  [7771a370] ModelingToolkitBase v1.6.2
   [2e0e35c7] Moshi v0.3.7
   [46d2c3a1] MuladdMacro v0.2.4
   [102ac46a] MultivariatePolynomials v0.5.13
   [d8a4904e] MutableArithmetics v1.6.7
   [77ba4419] NaNMath v1.1.3
 ⌅ [2edaba10] Nemo v0.52.4
-  [be0214bd] NonlinearSolveBase v2.9.1
+  [be0214bd] NonlinearSolveBase v2.9.2
+  [5959db7a] NonlinearSolveFirstOrder v1.11.0
   [6fe1bfb0] OffsetArrays v1.17.0
   [bac558e1] OrderedCollections v1.8.1
-  [bbf590c4] OrdinaryDiffEqCore v2.3.0
-  [3e851597] ParamPunPam v0.5.6
+  [bbf590c4] OrdinaryDiffEqCore v3.2.0
+  [3e851597] ParamPunPam v0.5.7
   [69de0a69] Parsers v2.8.3
   [e409e4f3] PoissonRandom v0.4.7
   [f517fe37] Polyester v0.7.18
@@ -130,7 +134,7 @@
   [27ebfcd6] Primes v0.5.7
   [92933f4c] ProgressMeter v1.11.0
   [fb686558] RandomExtensions v0.4.4
-  [73480bc8] RationalFunctionFields v0.2.3
+  [73480bc8] RationalFunctionFields v0.3.0
   [988b38a3] ReadOnlyArrays v0.2.0
   [795d4caa] ReadOnlyDicts v1.0.0
   [3cdcf5f2] RecipesBase v1.3.4
@@ -140,7 +144,7 @@
   [ae029012] Requires v1.3.1
   [7e49a35a] RuntimeGeneratedFunctions v0.5.16
   [94e857df] SIMDTypes v0.1.0
-  [0bca4576] SciMLBase v2.132.0
+  [0bca4576] SciMLBase v2.134.0
   [19f34311] SciMLJacobianOperators v0.1.12
   [a6db7da4] SciMLLogging v1.8.0
   [c0aeaf25] SciMLOperators v1.14.1
@@ -159,9 +163,9 @@
   [ec057cc2] StructUtils v2.6.2
   [220ca800] StructuralIdentifiability v0.5.18 `~/work/StructuralIdentifiability.jl/StructuralIdentifiability.jl`
   [2efcf032] SymbolicIndexingInterface v0.3.46
-⌅ [19f23fe9] SymbolicLimits v0.2.4
+  [19f23fe9] SymbolicLimits v1.1.0
   [d1185830] SymbolicUtils v4.11.0
-  [0c5d862f] Symbolics v7.5.1
+  [0c5d862f] Symbolics v7.6.0
   [ed4db957] TaskLocalValues v0.1.3
   [8ea1fca8] TermInterface v2.0.0
   [8290d209] ThreadingUtilities v0.5.5
@@ -175,10 +179,13 @@
 ⌅ [e134572f] FLINT_jll v301.300.102+0
   [020c3dae] Git_LFS_jll v3.7.0+0
   [f8c6e375] Git_jll v2.52.0+0
+  [1d5cc7b8] IntelOpenMP_jll v2025.2.0+0
   [94ce4f54] Libiconv_jll v1.18.0+0
+  [856f044c] MKL_jll v2025.2.0+0
   [656ef2d0] OpenBLAS32_jll v0.3.29+0
   [9bd350c2] OpenSSH_jll v10.2.1+0
   [efe28fd5] OpenSpecFun_jll v0.5.6+0
+  [1317d2d5] oneTBB_jll v2022.0.0+1
   [0dad84c5] ArgTools v1.1.2
   [56f22d72] Artifacts v1.11.0
   [2a0f44e3] Base64 v1.11.0
@@ -189,6 +196,7 @@
   [9fa8497b] Future v1.11.0
   [b77e0a4c] InteractiveUtils v1.11.0
   [ac6e5ff7] JuliaSyntaxHighlighting v1.12.0
+  [4af54fe1] LazyArtifacts v1.11.0
   [b27032c2] LibCURL v0.6.4
   [76f85450] LibGit2 v1.11.0
   [8f399da3] Libdl v1.11.0
@@ -229,4 +237,4 @@
   [3f19e933] p7zip_jll v17.7.0+0
 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`</code></pre></details>You can also download the 
 <a href="">manifest</a> file and the
-<a href="">project</a> file.</article><nav class="docs-footer"><a class="docs-footer-nextpage" href="tutorials/creating_ode/">Creating ODE System »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.16.1 on <span class="colophon-date" title="Thursday 15 January 2026 07:16">Thursday 15 January 2026</span>. Using Julia version 1.12.4.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+<a href="">project</a> file.</article><nav class="docs-footer"><a class="docs-footer-nextpage" href="tutorials/creating_ode/">Creating ODE System »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.16.1 on <span class="colophon-date" title="Tuesday 20 January 2026 08:52">Tuesday 20 January 2026</span>. Using Julia version 1.12.4.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>