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Refresh infra-structure and support cython 3.x (#16)
* Refresh infra-structure and support cython 3.x * review actions * add workflow_dispatch to ci-tests
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‎.git_archival.txt‎

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node: $Format:%H$
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node-date: $Format:%cI$
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describe-name: $Format:%(describe:tags=true,match=*[0-9]*)$
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ref-names: $Format:%D$

‎.gitattributes‎

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.git_archival.txt export-subst

‎.github/dependabot.yml‎

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# Reference:
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# - https://docs.github.com/en/code-security/supply-chain-security/keeping-your-dependencies-updated-automatically/keeping-your-actions-up-to-date-with-dependabot
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version: 2
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updates:
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- package-ecosystem: "github-actions"
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directory: "/"
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schedule:
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# Check for updates to GitHub Actions every weekday
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interval: "daily"
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labels:
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- "new: pull request"
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- "bot"

‎.github/workflows/ci-manifest.yml‎

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# Reference:
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# - https://github.com/actions/checkout
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name: ci-manifest
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on:
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pull_request:
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push:
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branches:
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- "main"
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- "v*x"
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- "!conda-lock-auto-update"
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- "!pre-commit-ci-update-config"
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- "!dependabot/*"
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tags:
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- "v*"
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workflow_dispatch:
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concurrency:
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group: ${{ github.workflow }}-${{ github.ref }}
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cancel-in-progress: true
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jobs:
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manifest:
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name: "check-manifest"
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uses: scitools/workflows/.github/workflows/ci-manifest.yml@2023.10.0

‎.github/workflows/ci-tests.yml‎

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name: ci-tests
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on:
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pull_request:
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push:
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branches:
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- "main"
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- "v*x"
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- "!conda-lock-auto-update"
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- "!pre-commit-ci-update-config"
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- "!dependabot/*"
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tags:
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- "v*"
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workflow_dispatch:
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concurrency:
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group: ${{ github.workflow }}-${{ github.ref }}
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cancel-in-progress: true
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jobs:
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tests:
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name: "tests py${{ matrix.python-version }}"
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runs-on: "ubuntu-latest"
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defaults:
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run:
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shell: bash -l {0}
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strategy:
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fail-fast: false
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matrix:
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python-version: ["3.9", "3.10", "3.11", "3.12"]
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steps:
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- uses: actions/checkout@v4
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with:
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fetch-depth: 0
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- name: "conda install"
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uses: conda-incubator/setup-miniconda@v2
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with:
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miniforge-variant: Mambaforge
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miniforge-version: latest
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python-version: ${{ matrix.python-version }}
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activate-environment: mo-pack-dev
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environment-file: requirements/mo_pack.yml
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auto-update-conda: false
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auto-activate-base: false
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- name: "conda configuration"
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run: |
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conda info
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conda list --explicit
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- name: "test with py${{ matrix.python-version }}"
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run: |
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python setup.py build_ext --inplace
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pytest

‎.gitignore‎

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*.pyc
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# Reference https://github.com/github/gitignore/blob/main/Python.gitignore
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# setuptools-scm
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_version.py
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# Byte-compiled / optimized / DLL files
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__pycache__/
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*.py[cod]
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*$py.class
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# C extensions
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*.c
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*.so
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# Distribution / packaging
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.Python
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build/
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develop-eggs/
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dist/
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downloads/
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eggs/
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.eggs/
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lib/
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lib64/
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parts/
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sdist/
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var/
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wheels/
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share/python-wheels/
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*.egg-info/
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.installed.cfg
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*.egg
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MANIFEST
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# PyInstaller
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# Usually these files are written by a python script from a template
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# before PyInstaller builds the exe, so as to inject date/other infos into it.
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*.manifest
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*.spec
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# Installer logs
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pip-log.txt
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pip-delete-this-directory.txt
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# Unit test / coverage reports
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htmlcov/
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.tox/
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.nox/
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.coverage
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.coverage.*
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.cache
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nosetests.xml
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coverage.xml
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*.cover
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*.py,cover
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.hypothesis/
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.pytest_cache/
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cover/
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# Translations
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*.mo
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*.pot
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# Django stuff:
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*.log
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local_settings.py
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db.sqlite3
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db.sqlite3-journal
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# Flask stuff:
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instance/
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.webassets-cache
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# Scrapy stuff:
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.scrapy
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# Sphinx documentation
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docs/_build/
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# PyBuilder
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.pybuilder/
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target/
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# Jupyter Notebook
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.ipynb_checkpoints
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# IPython
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profile_default/
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ipython_config.py
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# pyenv
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# For a library or package, you might want to ignore these files since the code is
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# intended to run in multiple environments; otherwise, check them in:
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# .python-version
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# pipenv
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# According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
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# However, in case of collaboration, if having platform-specific dependencies or dependencies
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# having no cross-platform support, pipenv may install dependencies that don't work, or not
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# install all needed dependencies.
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#Pipfile.lock
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# poetry
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# Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
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# This is especially recommended for binary packages to ensure reproducibility, and is more
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# commonly ignored for libraries.
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# https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
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#poetry.lock
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# pdm
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# Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control.
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#pdm.lock
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# pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it
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# in version control.
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# https://pdm.fming.dev/#use-with-ide
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.pdm.toml
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# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm
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__pypackages__/
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# Celery stuff
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celerybeat-schedule
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celerybeat.pid
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# SageMath parsed files
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*.sage.py
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# Environments
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.env
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.venv
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env/
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venv/
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ENV/
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env.bak/
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venv.bak/
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# Spyder project settings
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.spyderproject
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.spyproject
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# Rope project settings
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.ropeproject
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# mkdocs documentation
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/site
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# mypy
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.mypy_cache/
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.dmypy.json
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dmypy.json
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# Pyre type checker
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.pyre/
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# pytype static type analyzer
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.pytype/
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lib/mo_pack.egg-info/
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# Cython debug symbols
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cython_debug/
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lib/mo_pack/_packing.c
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lib/mo_pack/_packing*.so
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# PyCharm
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# JetBrains specific template is maintained in a separate JetBrains.gitignore that can
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# be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
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# and can be added to the global gitignore or merged into this file. For a more nuclear
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# option (not recommended) you can uncomment the following to ignore the entire idea folder.
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#.idea/

‎.pre-commit-config.yaml‎

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# See https://pre-commit.com for more information
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# See https://pre-commit.com/hooks.html for more hooks
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# See https://pre-commit.ci/#configuration
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ci:
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autofix_prs: false
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repos:
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- repo: https://github.com/pre-commit/pre-commit-hooks
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rev: "v4.5.0"
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hooks:
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# Prevent giant files from being committed.
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- id: check-added-large-files
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# Check whether files parse as valid Python.
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- id: check-ast
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# Check for file name conflicts on case-insensitive file-systems.
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- id: check-case-conflict
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# Check for files that contain merge conflict strings.
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- id: check-merge-conflict
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# Check for debugger imports and py37+ `breakpoint()` calls in Python source.
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- id: debug-statements
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# Check TOML file syntax.
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- id: check-toml
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# Check YAML file syntax.
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- id: check-yaml
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# Makes sure files end in a newline and only a newline
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- id: end-of-file-fixer
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exclude: nae.20100104-06_0001_0001.pp
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# Replaces or checks mixed line ending
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- id: mixed-line-ending
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exclude: nae.20100104-06_0001_0001.pp
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# Don't commit to main branch.
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#- id: no-commit-to-branch
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# Trims trailing whitespace
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- id: trailing-whitespace
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exclude: nae.20100104-06_0001_0001.pp
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- repo: https://github.com/codespell-project/codespell
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rev: "v2.2.6"
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hooks:
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- id: codespell
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types_or: [python, markdown]
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additional_dependencies: [tomli]
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- repo: https://github.com/aio-libs/sort-all
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rev: "v1.2.0"
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hooks:
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- id: sort-all
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types: [file, python]
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- repo: https://github.com/abravalheri/validate-pyproject
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rev: "v0.15"
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hooks:
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- id: validate-pyproject

‎.travis.yml‎

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