Merge branch 'main' into opposite_bug

Author: HGWright

.github/workflows/ci-locks.yml

@@ -18,5 +18,5 @@ concurrency:
 
 jobs:
   refresh_lockfiles:
-    uses: scitools/workflows/.github/workflows/refresh-lockfiles.yml@2025.02.0
+    uses: scitools/workflows/.github/workflows/refresh-lockfiles.yml@2025.06.1
     secrets: inherit

.github/workflows/ci-manifest.yml

@@ -25,4 +25,4 @@ concurrency:
 jobs:
   manifest:
     name: "check-manifest"
-    uses: scitools/workflows/.github/workflows/ci-manifest.yml@2025.02.0
+    uses: scitools/workflows/.github/workflows/ci-manifest.yml@2025.06.1

.github/workflows/ci-template-check.yml

@@ -0,0 +1,16 @@
+# Checks if a PR makes any changes that ought to be shared via templating.
+# See the called workflow in the scitools/workflows repo for more details.
+
+name: ci-template-check
+
+on:
+  pull_request_target:
+    branches:
+      - main
+
+jobs:
+  prompt-share:
+    uses: scitools/workflows/.github/workflows/[email protected]
+    secrets: inherit
+    with:
+      pr_number: ${{ github.event.pull_request.number }}

.github/workflows/ci-tests.yml

@@ -69,7 +69,7 @@ jobs:
 
     - name: "stratify tests (py${{ matrix.python-version }})"
       run: |
-        python setup.py build_ext --inplace
         python -m pip install --no-deps --editable .
+        python setup.py build_ext --inplace
         pytest ${{ matrix.cov-report }}
         ${{ matrix.codecov }}

.github/workflows/ci-wheels.yml

@@ -48,7 +48,7 @@ jobs:
         fetch-depth: 0
 
     - name: "build ${{ matrix.os }} (${{ matrix.arch }}) wheels"
-      uses: pypa/cibuildwheel@v2.22.0
+      uses: pypa/cibuildwheel@v3.0.0
       env:
         CIBW_SKIP: "cp39-* cp313-* pp* *-musllinux*"
         CIBW_ARCHS: ${{ matrix.arch }}

.pre-commit-config.yaml

@@ -38,7 +38,7 @@ repos:
 
 
 -   repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: "v0.9.4"
+    rev: "v0.11.13"
     hooks:
     -   id: ruff
         types: [file, python]
@@ -56,7 +56,7 @@ repos:
 
 
 -   repo: https://github.com/pycqa/isort
-    rev: '6.0.0'
+    rev: '6.0.1'
     hooks:
     -   id: isort
         name: isort (cython)
@@ -70,19 +70,19 @@ repos:
       types: [file, python]
 
 -   repo: https://github.com/pre-commit/mirrors-mypy
-    rev: 'v1.14.1'
+    rev: 'v1.16.0'
     hooks:
     -   id: mypy
         exclude: 'noxfile\.py|docs/conf\.py'
 
 -   repo: https://github.com/abravalheri/validate-pyproject
     # More exhaustive than Ruff RUF200.
-    rev: "v0.23"
+    rev: "v0.24.1"
     hooks:
     - id: validate-pyproject
 
 -   repo: https://github.com/scientific-python/cookie
-    rev: 2025.01.22
+    rev: 2025.05.02
     hooks:
     - id: sp-repo-review
       additional_dependencies: ["repo-review[cli]"]

pyproject.toml

@@ -1,10 +1,10 @@
 [build-system]
 # Defined by PEP 518
 requires = [
-  "Cython",
-  "oldest-supported-numpy",
-  "setuptools>=61",
-  "setuptools_scm[toml]>=7",
+  "Cython<3.1.0",
+  "numpy>=2",
+  "setuptools>=77.0.3",
+  "setuptools_scm[toml]>=8",
   "wheel",
 ]
 # Defined by PEP 517
@@ -17,7 +17,6 @@ authors = [
 classifiers = [
     "Development Status :: 5 - Production/Stable",
     "Intended Audience :: Science/Research",
-    "License :: OSI Approved :: BSD License",
     "Operating System :: POSIX",
     "Operating System :: POSIX :: Linux",
     "Operating System :: Unix",
@@ -44,7 +43,8 @@ keywords = [
     "python",
     "ocean-science",
 ]
-license = {text = "BSD-3-Clause"}
+license = "BSD-3-Clause"
+license-files = ["LICENSE"]
 name = "stratify"
 requires-python = ">=3.10"
 
@@ -53,7 +53,6 @@ Code = "https://github.com/SciTools-incubator/python-stratify"
 Issues = "https://github.com/SciTools-incubator/python-stratify/issues"
 
 [tool.setuptools]
-license-files = ["LICENSE"]
 zip-safe = false
 
 [tool.setuptools.dynamic]