Updated Dockerfile

Changed to cloning repo in dockerfile and doing lfs pulls

Author: gregbolet

Dockerfile

@@ -1,6 +1,6 @@
 FROM nvidia/cuda:12.6.0-devel-ubuntu24.04
 
-ARG HOSTOS=linux 
+# ARG HOSTOS=linux 
 
 # Set non-interactive frontend for apt-get to avoid prompts
 ENV DEBIAN_FRONTEND=noninteractive
@@ -23,15 +23,19 @@ RUN update-alternatives --install /usr/bin/clang++ clang++ /usr/bin/clang++-18 1
     update-alternatives --install /usr/bin/clang clang /usr/bin/clang-18 100 && \
     update-alternatives --install /usr/bin/llvm-cxxfilt llvm-cxxfilt /usr/bin/llvm-cxxfilt-18 100
 
+# clone the repo into the container
+RUN git clone https://github.com/Scientific-Computing-Lab/gpuFLOPBench.git /gpu-flopbench
+
+RUN cd /gpu-flopbench && git checkout camera-ready && git pull && git lfs pull
 
 # Set the working directory
 WORKDIR /gpu-flopbench
 
 # Copy the requirements file into the container
-COPY ./requirements.txt ./requirements.txt
+# COPY ./requirements.txt ./requirements.txt
 
 # if we are on a windows host, we need to remove the CRLF characters from all the files
-RUN sed -i 's/\r$//' requirements.txt
+# RUN sed -i 's/\r$//' requirements.txt
 
 # install miniconda
 RUN wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh && \
@@ -53,10 +57,11 @@ RUN source ~/anaconda3/bin/activate && \
 
 RUN source ~/anaconda3/bin/activate && \
     conda activate gpu-flopbench && \
-    pwd && ls -lah && pip install -r ./requirements.txt
+    pwd && ls -lah && pip install -r /gpu-flopbench/requirements.txt
 
 # Copy the source code into the container
-COPY . .
+# COPY . .
+
 
 # Run git-lfs pull to get large files
 #RUN git lfs install && \
@@ -66,20 +71,20 @@ COPY . .
 
 # if we are on a windows host, we need to remove the CRLF characters from all the files
 #RUN find . -type f -exec sed -i 's/\r$//' {} +
-RUN if [ "$HOSTOS" = "windows" ]; then \
-    echo "Removing CRLF characters from files..."; \
-    find . -type f \
-        -not -name "*.gz" \
-        -not -name "*.zip" \
-        -not -name "*.rar" \
-        -not -name "*.7z" \
-        -not -name "*.tar" \
-        -not -name "*.bz2" \
-        -not -name "*.tar.*" \
-        -exec sed -i 's/\r$//' {} +; \
-    else \
-    echo "HOSTOS is not windows; skipping CRLF removal."; \
-    fi 
+# RUN if [ "$HOSTOS" = "windows" ]; then \
+#     echo "Removing CRLF characters from files..."; \
+#     find . -type f \
+#         -not -name "*.gz" \
+#         -not -name "*.zip" \
+#         -not -name "*.rar" \
+#         -not -name "*.7z" \
+#         -not -name "*.tar" \
+#         -not -name "*.bz2" \
+#         -not -name "*.tar.*" \
+#         -exec sed -i 's/\r$//' {} +; \
+#     else \
+#     echo "HOSTOS is not windows; skipping CRLF removal."; \
+#     fi 
 
 # write out to the bashrc to source conda and activate the environment on container startup
 RUN echo 'conda activate gpu-flopbench' >> ~/.bashrc