Merge pull request #31 from SemClone/docs/add-purl2src-to-pipx-instructions

docs: Add purl2src to pipx inject instructions

Author: oscarvalenzuelab

README.md

@@ -82,7 +82,8 @@ pipx install mcp-semclone
 # IMPORTANT: Inject all SEMCL.ONE tool dependencies into the same isolated environment
 # This ensures all tools are available both as libraries and CLI commands
 # Required by some agents that need direct CLI tool access
-pipx inject mcp-semclone purl2notices osslili binarysniffer ospac vulnq upmex
+# Use --include-apps to make CLI commands globally available
+pipx inject mcp-semclone purl2notices purl2src osslili binarysniffer ospac vulnq upmex --include-apps
 ```
 
 **Benefits of pipx:**

guides/IDE_INTEGRATION_GUIDE.md

@@ -26,7 +26,8 @@ The SEMCL.ONE MCP server works with any IDE that supports the Model Context Prot
    pipx install mcp-semclone
 
    # IMPORTANT: Install all CLI dependencies - required by some agents
-   pipx inject mcp-semclone purl2notices osslili binarysniffer ospac vulnq upmex
+   # Use --include-apps to make CLI commands globally available
+   pipx inject mcp-semclone purl2notices purl2src osslili binarysniffer ospac vulnq upmex --include-apps
    ```
 
    **Option B: Using pip**: