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lines changed- seqware-archetypes
- seqware-archetype-legacy-ftl-workflow
- src
- main/resources
- META-INF/maven
- archetype-resources
- workflow
- config
- data
- workflows
- test/resources/projects/basic
- seqware-archetype-simple-legacy-ftl-workflow
- src
- main/resources
- META-INF/maven
- archetype-resources
- workflow
- bin
- config
- data
- workflows
- test/resources/projects/basic
- seqware-archetype-simplified-ftl-workflow
- src/main/resources
- META-INF/maven
- archetype-resources
- workflow
- config
- data
- workflows
- seqware-distribution
- src/assemble
- seqware-queryengine-legacy
- db
- prototypes
- binary_alignment_file_format
- slo_test
- postgresql_plugin
- scripts
- src
- main/java/net/sourceforge/seqware/queryengine
- backend
- factory
- impl
- io/berkeleydb
- comparators
- keycreators
- tuplebinders
- model
- store
- impl
- util
- iterators
- examples
- prototypes
- hadoop
- tools
- annotators
- exporters
- importers
- workers
- iterators
- processors
- reporters
- test
- java/net/sourceforge/seqware/queryengine/backend
- perl/scripts/U87
- resources
- 1102
- U87
- net/sourceforge/seqware/queryengine/tools
- MutationConsequenceImporter
- MutationDbSNPImporter
- MutationImporter
- working
- bed
- TextDumper
- seqware-queryengine
- docs/webservice-spec
- content
- v1
- analyses
- analysissets
- features_old
- featuresets
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- lib
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- static
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- src
- main
- javadoc
- java
- com/github/seqware/queryengine
- backInterfaces
- factory
- impl
- protobufIO
- tuplebinderIO
- kernel
- output
- model
- impl
- hbasemrlazy
- inMemory
- lazy
- interfaces
- plugins
- hbasemr
- inmemory
- plugins
- system
- exporters
- importers
- workers
- rest
- exception
- resources
- tutorial
- util
- obo
- org/apache/commons/cli
- protobuf
- resources
- webapp
- WEB-INF
- ui
- css
- images
- lib
- test
- javadoc
- java/com/github/seqware/queryengine
- impl/test
- util
- model/test
- util
- system/test
- queryDumper
- util
- resources
- com/github/seqware/queryengine/system
- FeatureImporter
- exporters
- tools
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