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updating the reference output for mutect2
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‎tests/output_ref_sim/mutect2/mutect2_clustered_vaf.txt‎

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project samples ID genome mutType chr start end ref alt mutClass IMDplot IMD VAF/CCF
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mutect2 example_2 . GRCh37 SNP 1 255000 255000 G T SOMATIC 1 1 0.55
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mutect2 example_2 . GRCh37 SNP 1 255001 255001 A C SOMATIC 1 1 0.54
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mutect2 example_2 . GRCh37 SNP 1 255002 255002 C T SOMATIC 1 1 0.54
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mutect2 example_2 . GRCh37 SNP 1 255003 255003 A C SOMATIC 1 1 0.54
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mutect2 example_2 . GRCh37 SNP 1 260000 260000 A C SOMATIC 4997 1 0.63
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mutect2 example_2 . GRCh37 SNP 1 260001 260001 G C SOMATIC 1 1 0.63
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mutect2 example_2 . GRCh37 SNP 1 260002 260002 A T SOMATIC 1 1 0.5
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mutect2 example_1 . GRCh37 SNP 1 255000 255000 G T SOMATIC c 1 0.55
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mutect2 example_1 . GRCh37 SNP 1 255001 255001 A C SOMATIC 1 1 0.54
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mutect2 example_1 . GRCh37 SNP 1 255002 255002 C T SOMATIC 1 1 0.54
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mutect2 example_1 . GRCh37 SNP 1 255003 255003 A C SOMATIC 1 1 0.54
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mutect2 example_1 . GRCh37 SNP 1 260000 260000 A C SOMATIC 4997 1 0.63
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mutect2 example_1 . GRCh37 SNP 1 260001 260001 G C SOMATIC 1 1 0.63
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mutect2 example_1 . GRCh37 SNP 1 260002 260002 A T SOMATIC 1 1 0.5

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