Merge pull request #73 from ktbolt/Getting-Started-Fix-formatting-errors_72

Fix formatting errors caused by blank lines ?

Author: ktbolt

documentation/getting_started.html

@@ -284,9 +284,11 @@ <h4 class="skipTo tutorial">Tutorial</h4>
       <span id="tutorial_create_finite_element_mesh">
         <zero-md src="getting_started/tutorial/create_finite_element_mesh/readme.md" no-shadow></zero-md>
       </span>
+      <!-- Comment out because simulation gui description is old
       <span id="tutorial_create_simulation">
         <zero-md src="getting_started/tutorial/create_simulation/readme.md" no-shadow></zero-md>
       </span>
+      -->
       <span id="tutorial_summary">
         <zero-md src="getting_started/tutorial/summary/readme.md" no-shadow></zero-md>
       </span>

documentation/getting_started/gui/data_manager/readme.md

@@ -255,9 +255,7 @@ The following table lists each <i>Tool Type</i> with a brief description of each
       A model can be imported into a <i>Project</i> without an image volume. After importing the model select the
       <b>Global Reinit</b> <i>Data Manager Menu</i> option to view the model.  
       </div>
-
     </td>
-
   </tr>
 
   <tr>
@@ -270,9 +268,7 @@ The following table lists each <i>Tool Type</i> with a brief description of each
       <div style="background-color: #F0F0F0; padding: 10px; border: 1px solid #e6e600; border-left: 6px solid #e6e600">
       A mesh cannot be imported into a <i>Project</i>.
       </div>
-
     </td>
-
   </tr>
 
   <tr>

documentation/getting_started/tutorial/create_finite_element_mesh/readme.md

@@ -57,18 +57,14 @@ Create an instance of a <i>Meshes Tool</i> named <b>aorta-iliacs</b> used to cre
     <td> <img src="/documentation/getting_started/tutorial/images/create-mesh-3.png" width="512" height="360"> </td>
     <td> A <i>Data Node</i> named <b>aorta-iliacs</b> (an instance of a <i>Meshes Tool</i>) is created under the
          <i>Data Manager</i> <i>Meshes Tool</i> type.
-
          <br><br>
          Select the <i>Data Manager</i> <i>Models</i> <i>CheckBox</i> to toggle off the visibility of the solid model segmentation geometry.
-
          <br><br>
          Close the <i>SV Modeling Panel</i> by selected the <b>X</b> in its <i>Tab</i>.
-
          <br><br>
          Double-click on the <i>Data Manager</i> <b>Meshes / aorta-iliacs</b> <i>Data Node</i> with the left mouse
          button to bring up the <i>SV Meshing Panel</i>.
     </td>
-
   </tr>
 </table>
 

documentation/getting_started/tutorial/create_segmentations/readme.md

@@ -71,25 +71,19 @@ for the main aorta and right iliac vessels.
   <tr>
     <td><img src="/documentation/getting_started/tutorial/images/create-seg-4.png" width="512" height="360"> </td>
     <td> Close the <i>SV Path Planning Panel</i> by selected the <b>X</b> in its <i>Tab</i>. <br><br>
-         Double-click on the <i>Data Manager</i> <b>Segmentations / aorta</b> <i>Data Node</i> with the left mouse 
-         button to bring up the <i>SV 2D Segmentation Panel</i>. The <i>Display</i> layout is changed to two 2D views 
-         on the left and one 3D view on the right. <br><br>
-
+         Double-click on the <i>Data Manager</i> <b>Segmentations / aorta</b> <i>Data Node</i> with the left mouse button to bring up the <i>SV 2D Segmentation Panel</i>. The <i>Display</i> layout is changed to two 2D views on the left and one 3D view on the right. <br><br>
          The 3D view displays geometry from any <i>Tool</i> that is selected to be visible using the
          <img src="/documentation/getting_started/tutorial/images/visible-toggle-box.png" width="20" height="18"> control.
-         The <b>aorta</b> and <b>left-iliac</b> paths are shown as yellow lines with blue markers.
-
+         The <b>aorta</b> and <b>left-iliac</b> paths are shown as yellow lines with blue markers.<br><br>
          The red rectangular region
          <img src="/documentation/getting_started/tutorial/images/create-seg-5.png" width="32" height="21">
          in the 3D view displays the 2D image slice extracted from the image volume. The slice is positioned and oriented
          using <b>aorta</b> <i>Path</i> geometry. The slice is moved along a <i>Path</i> using the <b>Reslice</b> <i>Slider</i>.
-         <br> <br>
-
+         <br><br>
          The upper left 2D view displays the 2D image slice; the lower the gradient of the 2D image slice used to visualize image edges.
          Image points and intensity values used for segmentation are interactively selected from the 2D views using the left mouse
          button.
     </td>
-
   </tr>
 
   <tr>
@@ -110,7 +104,6 @@ for the main aorta and right iliac vessels.
            <li> <img src="/documentation/getting_started/tutorial/images/seg-gui-paste.png" width="100" height="25"> - Create a new 
              segmentation at the current path location (slice plane location) from a copy of a segmentation. </li><br>
         </ul>
-
         <br>
         Segmentation methods: <br><br>
         <ul style="list-style-type:none;">
@@ -159,12 +152,10 @@ using the <i>Level Set</i> segmentation method.
          <br> <br>
          The level set contour is displayed in all three views as a closed red curve segmenting the vessel lumen from 
          surrounding tissue.
-
          <br><br>
          The contour is added to the <b>Contour List</b> <i>Table</i> as <b>0:SplinePolygon,LevelSet</b>, where <i>0</i> is
          the contour ID, <i>SplinePolygon</i> is geometric representation and <i>LevelSet</i> the segmentation method.
     </td>
-
   </tr>
 
   <tr>
@@ -261,13 +252,11 @@ for the aorta/right iliac bifurcation to the end of the left iliac artery.
     <td> Double-click on the <i>Data Manager</i> <b>Segmentations / left-iliac</b> <i>Data Node</i> with the left mouse
          button to bring up the <i>SV 2D Segmentation Panel</i>. The <i>Display</i> layout is changed to two 2D views
          on the left and one 3D view on the right. <br><br>
-
          The red rectangular region
          <img src="/documentation/getting_started/tutorial/images/create-seg-5.png" width="32" height="21">
          in the 3D view displays the 2D image slice extracted from the image volume. The slice is positioned and oriented
          using <b>left-iliac</b> <i>Path</i> geometry. The slice is moved along a <i>Path</i> using the <b>Reslice</b> <i>Slider</i>.
          <br> <br>
-
          The upper left 2D view displays the 2D image slice; the lower the gradient of the 2D image slice used to visualize image edges.
          Image points and intensity values used for segmentation are interactively selected from the 2D views using the left mouse
          button.
@@ -335,7 +324,6 @@ using the <i>Level Set</i> segmentation method.
     <td><img src="/documentation/getting_started/tutorial/images/create-left-iliac-seg-5.png" width="512" height="360"> </td>
     <td> Select the outer control point of the <b>Contour Manipulator</b> to reduce the size of the first contour until
          it completely fits in the </b>aorta</b>.
-
          <br><br>
          Press the <img src="/documentation/getting_started/gui/images/gui-save-icon.png" width="40" height="35">
          icon in the  <i>ToolBar</i> to save the <i>Project</i>. <br><br>

documentation/getting_started/tutorial/create_solid_model/readme.md

@@ -93,16 +93,12 @@ Create an instance of a <i>Models Tool</i> named <b>aorta-iliacs</b> used to cre
          <ul style="list-style-type:none;">
            <li> <img src="/documentation/getting_started/tutorial/images/model-gui-delete.png" width="114" height="25"> - Delete the selected
                 face(s). </li> <br>
-
            <li> <img src="/documentation/getting_started/tutorial/images/model-gui-fill-holes.png" width="114" height="25"> - Fill holes in the
                 surface with faces. </li> <br>
-
            <li> <img src="/documentation/getting_started/tutorial/images/model-gui-est-size.png" width="114" height="25"> - Estimate a good
                 size triangle edge size used to remesh the model's triangular surface.  </li> <br>
-
            <li> <img src="/documentation/getting_started/tutorial/images/model-gui-size.png" width="114" height="25"> - The
                 triangle edge size <i>TextBox</i> used to remesh the model's triangular surface. </li> <br>
-
            <li> <img src="/documentation/getting_started/tutorial/images/model-gui-remesh.png" width="114" height="25"> - Remesh the model's
                 triangular surface mesh using the traingle edge size given in the <i>TextBox</i>. </li> <br>
          </ul>
@@ -134,19 +130,15 @@ This section demonstrates how to create a <i>PolyData</i> solid model from the <
     <td><img src="/documentation/getting_started/tutorial/images/create-model-7.png" width="512" height="360"> </td>
     <td> Select the <img src="/documentation/getting_started/tutorial/images/model-gui-create-model.png" width="114" height="25"> 
          <i>Button</i> in the upper right of the <i>SV Modeling Panel</i>.
-
          <br><br>
          A <b>Create Solid Model</b> <i>DiaglogBox</i> appears. This displays the names of the <b>aorta</b> and <b>left-iliac</b>
          <i>Segmentations Data Nodes</i> with a <i>CheckBox</i>. The <i>CheckBox</i>s are used to select the segmentation
          lofted surfaces that will be joined together to create a solid model.
-
          <br><br>
          Select the <i>CheckBox</i> for the <b>aorta</b> and <b>left-iliac</b> segmentations.
-
          <br><br>
          Press the <b>Create Solid Model</b> <i>DiaglogBox</i> <b>OK</b> <i>Button</i>.
     </td>
-
   </tr>
 
   <tr>
@@ -167,7 +159,6 @@ This section demonstrates how to create a <i>PolyData</i> solid model from the <
     <td><img src="/documentation/getting_started/tutorial/images/create-model-9.png" width="512" height="360"> </td>
     <td> The <b>Face List</b> <i>Table</i> lists the four <i>Faces</i> created by joining the <b>aorta</b> and 
          <b>left-iliac</b> segmentations into a complete solid model. 
-       
         <br><br>
         The <b>Face List</b> <i>Table</i> columns define <i>Face</i> attributes
           <ul style="list-style-type:none;">