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1 | | -name: test Ubuntu |
| 1 | +name: ubuntu-latest |
2 | 2 | on: [push, pull_request] |
3 | 3 | jobs: |
4 | | - test: |
5 | | - strategy: |
6 | | - matrix: |
7 | | - name: [Ubuntu-20.04, Ubuntu-22.04] |
8 | | - include: |
9 | | - - name: Ubuntu-20.04 |
10 | | - version: ubuntu-20.04 |
11 | | - image: ubuntu20 |
12 | | - - name: Ubuntu-22.04 |
13 | | - version: ubuntu-22.04 |
14 | | - image: ubuntu22 |
15 | | - runs-on: ${{ matrix.version }} |
16 | | - container: simvascular/libraries:${{ matrix.image }} |
17 | | - steps: |
18 | | - - uses: actions/checkout@v4 |
19 | | - - name: Build svZeroDSolver |
20 | | - shell: bash |
21 | | - run: | |
22 | | - conda init |
23 | | - source /conda/etc/profile.d/conda.sh |
24 | | - conda activate svmultiphysics |
25 | | - git clone https://github.com/SimVascular/svZeroDSolver.git |
26 | | - cd svZeroDSolver |
27 | | - mkdir build |
28 | | - cd build |
29 | | - cmake .. |
30 | | - make -j2 |
31 | | - - name: Build svMultiPhysics |
32 | | - run: | |
33 | | - if [ -d "build" ]; then |
34 | | - rm -rf "build" |
35 | | - fi |
36 | | - mkdir build |
37 | | - cd build |
38 | | - cmake -DENABLE_COVERAGE=ON -DENABLE_ARRAY_INDEX_CHECKING=ON -DENABLE_UNIT_TEST=ON -DSV_USE_TRILINOS:BOOL=ON .. |
39 | | - make -j2 |
40 | | - cd .. |
41 | | - - name: Build svMultiPhysics (PETSc) |
42 | | - run: | |
43 | | - if [ -d "build-petsc" ]; then |
44 | | - rm -rf "build-petsc" |
45 | | - fi |
46 | | - mkdir build-petsc |
47 | | - cd build-petsc |
48 | | - cmake -DENABLE_COVERAGE=ON -DENABLE_ARRAY_INDEX_CHECKING=ON -DENABLE_UNIT_TEST=ON -DSV_PETSC_DIR:STRING=/petsc .. |
49 | | - make -j2 |
50 | | - cd .. |
51 | | - - name: Run integration tests |
52 | | - run: | |
53 | | - git config --global --add safe.directory /__w/svMultiPhysics/svMultiPhysics |
54 | | - git lfs pull |
55 | | - cd tests |
56 | | - conda run -n svmultiphysics pytest -rPv --durations=0 |
57 | | - - name: Run unit tests |
58 | | - run: | |
59 | | - cd build/svMultiPhysics-build/Source/solver |
60 | | - ctest --verbose |
61 | | - - name: Generate code coverage |
62 | | - if: ${{ matrix.version == 'ubuntu-22.04' }} |
63 | | - run: | |
64 | | - cd build/svMultiPhysics-build |
65 | | - make coverage |
66 | | - - name: Save coverage report |
67 | | - if: ${{ matrix.version == 'ubuntu-22.04' }} |
68 | | - uses: actions/upload-artifact@v4 |
69 | | - with: |
70 | | - name: coverage_report |
71 | | - path: build/svMultiPhysics-build/coverage |
72 | | - - name: Upload coverage reports to Codecov |
73 | | - if: ${{ matrix.version == 'ubuntu-22.04' }} |
74 | | - uses: codecov/codecov-action@v5 |
75 | | - env: |
76 | | - CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} |
| 4 | + test: |
| 5 | + runs-on: ubuntu-latest |
| 6 | + container: simvascular/libraries:ubuntu22 |
| 7 | + steps: |
| 8 | + - uses: actions/checkout@v4 |
| 9 | + - name: Build svZeroDSolver |
| 10 | + shell: bash |
| 11 | + run: | |
| 12 | + conda init |
| 13 | + source /conda/etc/profile.d/conda.sh |
| 14 | + conda activate svmultiphysics |
| 15 | + git clone https://github.com/SimVascular/svZeroDSolver.git |
| 16 | + cd svZeroDSolver |
| 17 | + mkdir build |
| 18 | + cd build |
| 19 | + cmake .. |
| 20 | + make -j2 |
| 21 | + - name: Build svMultiPhysics |
| 22 | + run: | |
| 23 | + if [ -d "build" ]; then |
| 24 | + rm -rf "build" |
| 25 | + fi |
| 26 | + mkdir build |
| 27 | + cd build |
| 28 | + cmake -DENABLE_COVERAGE=ON -DENABLE_ARRAY_INDEX_CHECKING=ON -DENABLE_UNIT_TEST=ON -DSV_USE_TRILINOS:BOOL=ON .. |
| 29 | + make -j2 |
| 30 | + cd .. |
| 31 | + - name: Build svMultiPhysics (PETSc) |
| 32 | + run: | |
| 33 | + if [ -d "build-petsc" ]; then |
| 34 | + rm -rf "build-petsc" |
| 35 | + fi |
| 36 | + mkdir build-petsc |
| 37 | + cd build-petsc |
| 38 | + cmake -DENABLE_COVERAGE=ON -DENABLE_ARRAY_INDEX_CHECKING=ON -DENABLE_UNIT_TEST=ON -DSV_PETSC_DIR:STRING=/petsc .. |
| 39 | + make -j2 |
| 40 | + cd .. |
| 41 | + - name: Run integration tests |
| 42 | + run: | |
| 43 | + git config --global --add safe.directory /__w/svMultiPhysics/svMultiPhysics |
| 44 | + git lfs pull |
| 45 | + cd tests |
| 46 | + conda run -n svmultiphysics pytest -rPv --durations=0 |
| 47 | + - name: Run unit tests |
| 48 | + run: | |
| 49 | + cd build/svMultiPhysics-build/Source/solver |
| 50 | + ctest --verbose |
| 51 | + - name: Generate code coverage |
| 52 | + run: | |
| 53 | + cd build/svMultiPhysics-build |
| 54 | + make coverage |
| 55 | + - name: Save coverage report |
| 56 | + uses: actions/upload-artifact@v4 |
| 57 | + with: |
| 58 | + name: coverage_report |
| 59 | + path: build/svMultiPhysics-build/coverage |
| 60 | + - name: Upload coverage reports to Codecov |
| 61 | + uses: codecov/codecov-action@v5 |
| 62 | + env: |
| 63 | + CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} |
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