DICOM Seg Writer operater: Fix for case where input image is already a numpy array (Project-MONAI#515)

* Fix for case where input image is already a numpy array

Signed-off-by: Chris Bridge <[email protected]>

* Update example apps' test data path, patch hsdk in local env, and ensure correct MD SDK is used in dev env (Project-MONAI#516)

* Add post intall action to patch holoscan package, v2.7 and 2.8

Signed-off-by: M Q <[email protected]>

* Update fixed turorials

Signed-off-by: M Q <[email protected]>

* Updated the setup post install action, local sdk version, and notebook examples

Signed-off-by: M Q <[email protected]>

* Updated the doc too

Signed-off-by: M Q <[email protected]>

* Fix linting error

Signed-off-by: M Q <[email protected]>

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Signed-off-by: M Q <[email protected]>

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Signed-off-by: Chris Bridge <[email protected]>
Signed-off-by: M Q <[email protected]>
Co-authored-by: Ming M Qin <[email protected]>
Signed-off-by: Simone Bendazzoli <[email protected]>

Author: 2 people

monai/deploy/operators/dicom_seg_writer_operator.py

@@ -288,8 +288,10 @@ def process_images(
             seg_image_numpy = image.asnumpy()
         elif isinstance(image, (Path, str)):
             seg_image_numpy = self._image_file_to_numpy(str(image))
-        elif not isinstance(image, np.ndarray):
-            raise ValueError("'image' is not a numpy array, Image object, or supported image file.")
+        else:
+            if not isinstance(image, np.ndarray):
+                raise ValueError("'image' is not a numpy array, Image object, or supported image file.")
+            seg_image_numpy = image
 
         # Pick DICOM Series that was used as input for getting the seg image.
         # For now, first one in the list.