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<div class="header">
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<div class="headertitle"><div class="title">ImageRegistrationMethod2/ImageRegistrationMethod2.java</div></div>
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</div><!--header-->
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<div class="contents">
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<div class="fragment"><div class="line"><span class="comment">/*=========================================================================</span></div>
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<div class="line"><span class="comment"> *</span></div>
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<div class="line"><span class="comment"> * Copyright NumFOCUS</span></div>
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<div class="line"><span class="comment"> *</span></div>
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<div class="line"><span class="comment"> * Licensed under the Apache License, Version 2.0 (the &quot;License&quot;);</span></div>
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<div class="line"><span class="comment"> * you may not use this file except in compliance with the License.</span></div>
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<div class="line"><span class="comment"> * You may obtain a copy of the License at</span></div>
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<div class="line"><span class="comment"> *</span></div>
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<div class="line"><span class="comment"> * http://www.apache.org/licenses/LICENSE-2.0.txt</span></div>
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<div class="line"><span class="comment"> *</span></div>
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<div class="line"><span class="comment"> * Unless required by applicable law or agreed to in writing, software</span></div>
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<div class="line"><span class="comment"> * distributed under the License is distributed on an &quot;AS IS&quot; BASIS,</span></div>
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<div class="line"><span class="comment"> * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.</span></div>
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<div class="line"><span class="comment"> * See the License for the specific language governing permissions and</span></div>
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<div class="line"><span class="comment"> * limitations under the License.</span></div>
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<div class="line"><span class="comment"> *</span></div>
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<div class="line"><span class="comment"> *=========================================================================*/</span></div>
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<div class="line"> </div>
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<div class="line"><span class="keyword">import</span> org.itk.simple.*;</div>
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<div class="line"><span class="keyword">import</span> java.text.DecimalFormat;</div>
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<div class="line"> </div>
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<div class="line"><span class="keyword">class </span>IterationUpdate <span class="keyword">extends</span> Command {</div>
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<div class="line"> <span class="keyword">private</span> ImageRegistrationMethod method;</div>
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<div class="line"> </div>
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<div class="line"> <span class="keyword">public</span> IterationUpdate(ImageRegistrationMethod m) {</div>
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<div class="line"> method = m;</div>
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<div class="line"> }</div>
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<div class="line"> </div>
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<div class="line"> <span class="keyword">public</span> <span class="keywordtype">void</span> execute() {</div>
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<div class="line"> VectorDouble pos = method.getOptimizerPosition();</div>
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<div class="line"> DecimalFormat df = <span class="keyword">new</span> DecimalFormat(<span class="stringliteral">&quot;0.00000&quot;</span>);</div>
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<div class="line"> System.out.println(String.format(<span class="stringliteral">&quot;%3d = %10s : [%s, %s]&quot;</span>,</div>
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<div class="line"> method.getOptimizerIteration(),</div>
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<div class="line"> df.format(method.getMetricValue()),</div>
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<div class="line"> df.format(pos.get(0)), df.format(pos.get(1))));</div>
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<div class="line"> }</div>
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<div class="line">}</div>
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<div class="line"> </div>
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<div class="line"><span class="keyword">public</span> <span class="keyword">class </span>ImageRegistrationMethod2 {</div>
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<div class="line"> </div>
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<div class="line"> <span class="keyword">public</span> <span class="keyword">static</span> <span class="keywordtype">void</span> main(String[] args) <span class="keywordflow">throws</span> Exception {</div>
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<div class="line"> <span class="keywordflow">if</span> (args.length &lt; 3) {</div>
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<div class="line"> System.out.println(<span class="stringliteral">&quot;Usage: ImageRegistrationMethod2 &lt;fixedImageFile&gt; &lt;movingImageFile&gt; &lt;outputTransformFile&gt;&quot;</span>);</div>
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<div class="line"> System.exit(1);</div>
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<div class="line"> }</div>
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<div class="line"> </div>
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<div class="line"> ImageFileReader reader = <span class="keyword">new</span> ImageFileReader();</div>
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<div class="line"> reader.setOutputPixelType(<a class="code hl_enumeration" href="namespaceitk_1_1simple.html#ae40bd64640f4014fba1a8a872ab4df98">PixelIDValueEnum</a>.sitkFloat32);</div>
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<div class="line"> </div>
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<div class="line"> reader.setFileName(args[0]);</div>
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<div class="line"> Image fixedImage = reader.execute();</div>
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<div class="line"> fixedImage = SimpleITK.normalize(fixedImage);</div>
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<div class="line"> fixedImage = SimpleITK.discreteGaussian(fixedImage, 2.0);</div>
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<div class="line"> </div>
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<div class="line"> reader.setFileName(args[1]);</div>
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<div class="line"> Image movingImage = reader.execute();</div>
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<div class="line"> movingImage = SimpleITK.normalize(movingImage);</div>
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<div class="line"> movingImage = SimpleITK.discreteGaussian(movingImage, 2.0);</div>
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<div class="line"> </div>
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<div class="line"> ImageRegistrationMethod R = <span class="keyword">new</span> ImageRegistrationMethod();</div>
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<div class="line"> R.setMetricAsJointHistogramMutualInformation();</div>
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<div class="line"> </div>
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<div class="line"> <span class="keywordtype">double</span> learningRate = 1.0;</div>
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<div class="line"> <span class="keywordtype">int</span> numberOfIterations = 200;</div>
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<div class="line"> <span class="keywordtype">double</span> convergenceMinimumValue = 1e-4;</div>
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<div class="line"> <span class="keywordtype">int</span> convergenceWindowSize = 5;</div>
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<div class="line"> </div>
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<div class="line"> R.setOptimizerAsGradientDescentLineSearch(learningRate,</div>
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<div class="line"> numberOfIterations,</div>
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<div class="line"> convergenceMinimumValue,</div>
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<div class="line"> convergenceWindowSize);</div>
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<div class="line"> </div>
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<div class="line"> R.setInitialTransform(<span class="keyword">new</span> TranslationTransform(fixedImage.getDimension()));</div>
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<div class="line"> R.setInterpolator(<a class="code hl_enumeration" href="namespaceitk_1_1simple.html#a7cb1ef8bd02c669c02ea2f9f5aa374e5">InterpolatorEnum</a>.sitkLinear);</div>
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<div class="line"> </div>
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<div class="line"> IterationUpdate cmd = <span class="keyword">new</span> IterationUpdate(R);</div>
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<div class="line"> R.addCommand(<a class="code hl_enumeration" href="namespaceitk_1_1simple.html#aa7399868984d99493c5a307cce373ace">EventEnum</a>.sitkIterationEvent, cmd);</div>
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<div class="line"> </div>
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<div class="line"> Transform outTx = R.execute(fixedImage, movingImage);</div>
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<div class="line"> </div>
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<div class="line"> outTx.writeTransform(args[2]);</div>
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<div class="line"> }</div>
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<div class="line">}</div>
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<div class="ttc" id="anamespaceitk_1_1simple_html_a7cb1ef8bd02c669c02ea2f9f5aa374e5"><div class="ttname"><a href="namespaceitk_1_1simple.html#a7cb1ef8bd02c669c02ea2f9f5aa374e5">itk::simple::InterpolatorEnum</a></div><div class="ttdeci">InterpolatorEnum</div><div class="ttdef"><b>Definition</b> <a href="sitkInterpolator_8h_source.html#l00028">sitkInterpolator.h:29</a></div></div>
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<div class="ttc" id="anamespaceitk_1_1simple_html_aa7399868984d99493c5a307cce373ace"><div class="ttname"><a href="namespaceitk_1_1simple.html#aa7399868984d99493c5a307cce373ace">itk::simple::EventEnum</a></div><div class="ttdeci">EventEnum</div><div class="ttdoc">Events which can be observed from ProcessObject.</div><div class="ttdef"><b>Definition</b> <a href="sitkEvent_8h_source.html#l00031">sitkEvent.h:32</a></div></div>
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<div class="ttc" id="anamespaceitk_1_1simple_html_ae40bd64640f4014fba1a8a872ab4df98"><div class="ttname"><a href="namespaceitk_1_1simple.html#ae40bd64640f4014fba1a8a872ab4df98">itk::simple::PixelIDValueEnum</a></div><div class="ttdeci">PixelIDValueEnum</div><div class="ttdoc">Enumerated values of pixelIDs.</div><div class="ttdef"><b>Definition</b> <a href="sitkPixelIDValues_8h_source.html#l00100">sitkPixelIDValues.h:101</a></div></div>
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