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‎doxygen/latest/html/CSharp_2ImageGetSetBuffer_8cs-example.html‎

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<div class="line"> Console.WriteLine(<span class="stringliteral">&quot;Pixel value total: {0}&quot;</span>, total);</div>
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<div class="line"> </div>
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<div class="line"> <span class="comment">// Set buffer of new SimpleITK Image from managed array.</span></div>
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<div class="line"> <span class="comment">// bufferAsArray could also have come from a bmp,png,etc...</span></div>
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<div class="line"> <span class="comment">// bufferAsArray could also have come from a BMP,PNG,etc...</span></div>
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<div class="line"> </div>
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<div class="line"> uint width = input.GetWidth();</div>
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<div class="line"> uint height = input.GetHeight();</div>

‎doxygen/latest/html/DemonsRegistration1_2DemonsRegistration1_8cs-example.html‎

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‎doxygen/latest/html/DemonsRegistration1_2DemonsRegistration1_8java-example.html‎

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<div class="header">
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<div class="headertitle"><div class="title">DemonsRegistration1/DemonsRegistration1.java</div></div>
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</div><!--header-->
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<div class="contents">
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<div class="fragment"><div class="line"><span class="comment">/*=========================================================================</span></div>
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<div class="line"><span class="comment"> *</span></div>
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<div class="line"><span class="comment"> * Copyright NumFOCUS</span></div>
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<div class="line"><span class="comment"> *</span></div>
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<div class="line"><span class="comment"> * Licensed under the Apache License, Version 2.0 (the &quot;License&quot;);</span></div>
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<div class="line"><span class="comment"> * you may not use this file except in compliance with the License.</span></div>
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<div class="line"><span class="comment"> * You may obtain a copy of the License at</span></div>
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<div class="line"><span class="comment"> *</span></div>
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<div class="line"><span class="comment"> * http://www.apache.org/licenses/LICENSE-2.0.txt</span></div>
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<div class="line"><span class="comment"> *</span></div>
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<div class="line"><span class="comment"> * Unless required by applicable law or agreed to in writing, software</span></div>
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<div class="line"><span class="comment"> * distributed under the License is distributed on an &quot;AS IS&quot; BASIS,</span></div>
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<div class="line"><span class="comment"> * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.</span></div>
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<div class="line"><span class="comment"> * See the License for the specific language governing permissions and</span></div>
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<div class="line"><span class="comment"> * limitations under the License.</span></div>
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<div class="line"><span class="comment"> *</span></div>
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<div class="line"><span class="comment"> *=========================================================================*/</span></div>
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<div class="line"> </div>
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<div class="line"><span class="comment">// A SimpleITK example demonstrating the classic Demons image registration.</span></div>
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<div class="line"> </div>
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<div class="line"><span class="keyword">import</span> org.itk.simple.Image;</div>
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<div class="line"><span class="keyword">import</span> org.itk.simple.SimpleITK;</div>
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<div class="line"><span class="keyword">import</span> org.itk.simple.HistogramMatchingImageFilter;</div>
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<div class="line"><span class="keyword">import</span> org.itk.simple.DemonsRegistrationFilter;</div>
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<div class="line"><span class="keyword">import</span> org.itk.simple.Transform;</div>
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<div class="line"><span class="keyword">import</span> org.itk.simple.PixelIDValueEnum;</div>
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<div class="line"><span class="keyword">import</span> org.itk.simple.EventEnum;</div>
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<div class="line"><span class="keyword">import</span> org.itk.simple.Command;</div>
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<div class="line"> </div>
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<div class="line"><span class="keyword">public</span> <span class="keyword">class </span>DemonsRegistration1 {</div>
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<div class="line"> <span class="keyword">public</span> <span class="keyword">static</span> <span class="keywordtype">void</span> main(String[] args) {</div>
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<div class="line"> <span class="keywordflow">if</span> (args.length &lt; 3) {</div>
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<div class="line"> System.out.println(<span class="stringliteral">&quot;Usage: DemonsRegistration1 &lt;fixedImageFile&gt; &lt;movingImageFile&gt; &lt;outputTransformFile&gt;&quot;</span>);</div>
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<div class="line"> System.exit(1);</div>
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<div class="line"> }</div>
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<div class="line"> </div>
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<div class="line"> <span class="comment">// Read the fixed and moving images as float32</span></div>
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<div class="line"> Image fixed = SimpleITK.readImage(args[0], PixelIDValueEnum.sitkFloat32);</div>
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<div class="line"> Image moving = SimpleITK.readImage(args[1], PixelIDValueEnum.sitkFloat32);</div>
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<div class="line"> </div>
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<div class="line"> <span class="comment">// Perform histogram matching of the moving image to the fixed image</span></div>
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<div class="line"> HistogramMatchingImageFilter matcher = <span class="keyword">new</span> HistogramMatchingImageFilter();</div>
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<div class="line"> matcher.setNumberOfHistogramLevels(1024);</div>
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<div class="line"> matcher.setNumberOfMatchPoints(7);</div>
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<div class="line"> matcher.thresholdAtMeanIntensityOn();</div>
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<div class="line"> moving = matcher.execute(moving, fixed);</div>
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<div class="line"> </div>
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<div class="line"> <span class="comment">// The basic Demons Registration Filter</span></div>
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<div class="line"> <span class="comment">// Note there is a whole family of Demons Registration algorithms included in SimpleITK</span></div>
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<div class="line"> DemonsRegistrationFilter demons = <span class="keyword">new</span> DemonsRegistrationFilter();</div>
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<div class="line"> demons.setNumberOfIterations(50);</div>
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<div class="line"> <span class="comment">// Standard deviation for Gaussian smoothing of displacement field</span></div>
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<div class="line"> demons.setStandardDeviations(1.0);</div>
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<div class="line"> </div>
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<div class="line"> <span class="comment">// Add iteration callback</span></div>
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<div class="line"> IterationUpdate cmd = <span class="keyword">new</span> IterationUpdate(demons);</div>
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<div class="line"> demons.addCommand(EventEnum.sitkIterationEvent, cmd);</div>
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<div class="line"> </div>
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<div class="line"> Image displacementField = demons.execute(fixed, moving);</div>
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<div class="line"> </div>
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<div class="line"> System.out.println(<span class="stringliteral">&quot;-------&quot;</span>);</div>
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<div class="line"> System.out.println(<span class="stringliteral">&quot;Number Of Iterations: &quot;</span> + demons.getElapsedIterations());</div>
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<div class="line"> System.out.println(<span class="stringliteral">&quot; RMS: &quot;</span> + demons.getRMSChange());</div>
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<div class="line"> </div>
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<div class="line"> <span class="comment">// Create and write the displacement field transform</span></div>
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<div class="line"> Transform outTx = <span class="keyword">new</span> org.itk.simple.DisplacementFieldTransform(displacementField);</div>
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<div class="line"> SimpleITK.writeTransform(outTx, args[2]);</div>
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<div class="line"> }</div>
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<div class="line"> </div>
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<div class="line"> <span class="comment">// Callback class for iteration events</span></div>
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<div class="line"> <span class="keyword">static</span> <span class="keyword">class </span>IterationUpdate <span class="keyword">extends</span> Command {</div>
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<div class="line"> <span class="keyword">private</span> DemonsRegistrationFilter filter;</div>
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<div class="line"> </div>
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<div class="line"> <span class="keyword">public</span> IterationUpdate(DemonsRegistrationFilter filter) {</div>
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<div class="line"> super();</div>
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<div class="line"> this.filter = filter;</div>
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<div class="line"> }</div>
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<div class="line"> </div>
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<div class="line"> <span class="keyword">public</span> <span class="keywordtype">void</span> execute() {</div>
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<div class="line"> System.out.format(<span class="stringliteral">&quot;%3d = %10.5f\n&quot;</span>, filter.getElapsedIterations(), filter.getMetric());</div>
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<div class="line"> }</div>
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<div class="line"> }</div>
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<div class="line">}</div>
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