ismb_sc_2018_ws_standalone

Running the Single Cell Workshop Practicals Locally

Note, this is not for running during the ISMB workshop, as it involves downloading a number of large files and it will deplete the bandwidth available. Best to do this from home or from your workplace.

The practicals involve using Rstudio having the single cell software all installed along with access to the tutorial data sets.

For this to work, you must have Docker installed. Visit https://www.docker.com/ to download and install docker.

Once Docker is running, you can perform the following operations to begin:

 # pull the docker image:
 docker pull trinityctat/scellismb2018
 
 # download the tutorial data set:
 wget https://data.broadinstitute.org/Trinity/RNASEQ_WORKSHOP/ismb_sc2018.pbmcs.tar.gz

 # unpack the data
 tar xvf ismb_sc2018.pbmcs.tar.gz

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