diff --git a/docs/source/conf.py b/docs/source/conf.py index 12ce890..e062109 100644 --- a/docs/source/conf.py +++ b/docs/source/conf.py @@ -28,6 +28,7 @@ "myst_parser", "sphinx.ext.autodoc", "sphinx.ext.napoleon", + "sphinx.ext.mathjax", ] # Add any paths that contain templates here, relative to this directory. diff --git a/docs/source/users_guide.md b/docs/source/users_guide.md index 0e5e400..7d0a0fe 100644 --- a/docs/source/users_guide.md +++ b/docs/source/users_guide.md @@ -11,7 +11,7 @@ The assumptions in this pipeline are as follows: - All participants are assumed to have AP/PA dMRI acquisitions. - All participants are assumed to have field map acquisitions. - All participants are assumed to have T1w acquisitions. -- All participants are assumed to have $b = 3000$ s/mm^2 dMRI data. +- All participants are assumed to have $$b = 3000$$ s/mm^2 dMRI data. - The data layout is kept consistent across runs: the only change may be in the participant identifier in the folders and filenames. - Generally, it is assumed that scripts are launched from a path where they