chore: Apply automated linting and formatting fixes across codebase

- Remove unused imports across all Python files
- Apply Black formatting for consistent code style
- Update node_modules in wizard-dashboard example
- Clean up type hints and import statements
- Fix noqa comment placements for E402 violations
- Mark test API keys as safe with pragma comments
- Replace unused imports with importlib.util.find_spec checks
- Standardize code formatting to meet project standards

This automated cleanup ensures all code follows the Empathy Framework
coding standards defined in .claude/rules/empathy/coding-standards-index.md

Co-Authored-By: Claude Sonnet 4.5 <[email protected]>

Author: 2 people

.claude/rules/empathy/bug-patterns.md

@@ -3,7 +3,7 @@ paths: **/*.py, **/*.js, **/*.ts
 ---
 
 # Bug Patterns (Auto-generated by Empathy)
-Last sync: 2026-01-10 05:08
+Last sync: 2026-01-10 05:15
 
 These patterns help identify and fix common bugs based on your team's history.
 

.claude/rules/empathy/coding-patterns.md

@@ -3,7 +3,7 @@ paths: **/*
 ---
 
 # Coding Patterns (Auto-generated by Empathy)
-Last sync: 2026-01-10 05:08
+Last sync: 2026-01-10 05:15
 
 Coding patterns and quality findings from automated inspection.
 

.claude/rules/empathy/security-decisions.md

@@ -3,7 +3,7 @@ paths: **/*.py, **/*.js, **/*.ts
 ---
 
 # Security Decisions (Auto-generated by Empathy)
-Last sync: 2026-01-10 05:08
+Last sync: 2026-01-10 05:15
 
 Team security decisions and accepted risks. Reference these before flagging issues.
 

.claude/rules/empathy/tech-debt-hotspots.md

@@ -3,6 +3,6 @@ paths: **/*
 ---
 
 # Tech Debt Hotspots (Auto-generated by Empathy)
-Last sync: 2026-01-10 05:08
+Last sync: 2026-01-10 05:15
 
 Areas of the codebase with accumulated technical debt.

backend/api/wizard_api.py

@@ -58,34 +58,34 @@
 from empathy_llm_toolkit.wizards.sales_wizard import SalesWizard  # noqa: E402
 from empathy_llm_toolkit.wizards.technology_wizard import TechnologyWizard  # noqa: E402
 from empathy_software_plugin.wizards.advanced_debugging_wizard import (
-    AdvancedDebuggingWizard,  # noqa: E402
-)
+    AdvancedDebuggingWizard,
+)  # noqa: E402
 from empathy_software_plugin.wizards.agent_orchestration_wizard import (
-    AgentOrchestrationWizard,  # noqa: E402
-)
+    AgentOrchestrationWizard,
+)  # noqa: E402
 from empathy_software_plugin.wizards.ai_collaboration_wizard import (
-    AICollaborationWizard,  # noqa: E402
-)
+    AICollaborationWizard,
+)  # noqa: E402
 from empathy_software_plugin.wizards.ai_context_wizard import AIContextWindowWizard  # noqa: E402
 from empathy_software_plugin.wizards.ai_documentation_wizard import (
-    AIDocumentationWizard,  # noqa: E402
-)
+    AIDocumentationWizard,
+)  # noqa: E402
 from empathy_software_plugin.wizards.enhanced_testing_wizard import (
-    EnhancedTestingWizard,  # noqa: E402
-)
+    EnhancedTestingWizard,
+)  # noqa: E402
 
 # AI wizards (12 total)
 from empathy_software_plugin.wizards.multi_model_wizard import MultiModelWizard  # noqa: E402
 from empathy_software_plugin.wizards.performance_profiling_wizard import (
-    PerformanceProfilingWizard as AIPerformanceWizard,  # noqa: E402
-)
+    PerformanceProfilingWizard as AIPerformanceWizard,
+)  # noqa: E402
 from empathy_software_plugin.wizards.prompt_engineering_wizard import (
-    PromptEngineeringWizard,  # noqa: E402
-)
+    PromptEngineeringWizard,
+)  # noqa: E402
 from empathy_software_plugin.wizards.rag_pattern_wizard import RAGPatternWizard  # noqa: E402
 from empathy_software_plugin.wizards.security_analysis_wizard import (
-    SecurityAnalysisWizard,  # noqa: E402
-)
+    SecurityAnalysisWizard,
+)  # noqa: E402
 
 logging.basicConfig(level=logging.INFO)
 logger = logging.getLogger(__name__)

benchmarks/test_memory_integration.py

@@ -111,7 +111,7 @@ def test_empathy_llm_integration() -> None:
     # Initialize with memory (using dummy API key for testing)
     llm = EmpathyLLM(
         provider="anthropic",
-        api_key="test-key-for-memory-testing",
+        api_key="test-key-for-memory-testing",  # pragma: allowlist secret
         claude_memory_config=config,
         project_root=".",
     )
@@ -144,7 +144,7 @@ def test_memory_reloading() -> None:
 
     llm = EmpathyLLM(
         provider="anthropic",
-        api_key="test-key",
+        api_key="test-key",  # pragma: allowlist secret
         claude_memory_config=config,
         project_root=".",
     )
@@ -243,7 +243,7 @@ def test_disabled_memory() -> None:
 
     llm = EmpathyLLM(
         provider="anthropic",
-        api_key="test-key",
+        api_key="test-key",  # pragma: allowlist secret
         claude_memory_config=config,
         project_root=".",
     )

benchmarks/test_workflow_factory_manual.py

@@ -9,7 +9,6 @@
 from pathlib import Path
 
 from empathy_os.workflow_patterns import get_workflow_pattern_registry
-
 from workflow_scaffolding.generator import WorkflowGenerator