Merge pull request #20 from Anas-Elhounsri/dev

Release 0.1.1

Author: Anas-Elhounsri

src/metacheck/cli.py

@@ -1,73 +1,74 @@
-import argparse
-import os
-from pathlib import Path
-from metacheck.run_somef import run_somef_batch
-from metacheck.run_analyzer import run_analysis
-
-
-def cli():
-    parser = argparse.ArgumentParser(description="Detect metadata pitfalls in software repositories using SoMEF.")
-    parser.add_argument(
-        "--input",
-        nargs="+",
-        required=True,
-        help="One or more JSON files containing repositories (e.g., GitHub, GitLab) OR existing SoMEF output files when using --skip-somef."
-    )
-    parser.add_argument(
-        "--skip-somef",
-        action="store_true",
-        help="Skip SoMEF execution and analyze existing SoMEF output files directly. --input should point to SoMEF JSON files."
-    )
-    parser.add_argument(
-        "--pitfalls-output",
-        default=os.path.join(os.getcwd(), "pitfalls_outputs"),
-        help="Directory to store pitfall JSON-LD files (default: ./pitfalls_outputs)."
-    )
-    parser.add_argument(
-        "--analysis-output",
-        default=os.path.join(os.getcwd(), "analysis_results.json"),
-        help="File path for summary results (default: ./analysis_results.json)."
-    )
-    parser.add_argument(
-        "--threshold",
-        type=float,
-        default=0.8,
-        help="SoMEF confidence threshold (default: 0.8). Only used when running SoMEF."
-    )
-
-    args = parser.parse_args()
-
-    if args.skip_somef:
-        print(f"Skipping SoMEF execution. Analyzing {len(args.input)} existing SoMEF output files...")
-
-        somef_json_paths = []
-        for json_path in args.input:
-            if not os.path.exists(json_path):
-                print(f"Warning: File not found, skipping: {json_path}")
-                continue
-            somef_json_paths.append(Path(json_path))
-
-        if not somef_json_paths:
-            print("Error: No valid SoMEF output files found.")
-            return
-
-        print(f"Analyzing {len(somef_json_paths)} SoMEF output files...")
-        run_analysis(somef_json_paths, args.pitfalls_output, args.analysis_output)
-
-    else:
-        threshold = args.threshold
-        somef_output_dir = os.path.join(os.getcwd(), "somef_outputs")
-
-        print(f"Detected {len(args.input)} input files:")
-        for json_path in args.input:
-            if not os.path.exists(json_path):
-                print(f"Skipping missing file: {json_path}")
-                continue
-            print(f"Processing repositories from {json_path}")
-            run_somef_batch(json_path, somef_output_dir, threshold)
-
-        run_analysis(somef_output_dir, args.pitfalls_output, args.analysis_output)
-
-
-if __name__ == "__main__":
+import argparse
+import os
+from pathlib import Path
+from metacheck.run_somef import run_somef_batch
+from metacheck.run_analyzer import run_analysis
+
+
+def cli():
+    parser = argparse.ArgumentParser(description="Detect metadata pitfalls in software repositories using SoMEF.")
+    parser.add_argument(
+        "--input",
+        nargs="+",
+        required=True,
+        help="One or more JSON files containing repositories (e.g., GitHub, GitLab) OR existing SoMEF output files when using --skip-somef."
+    )
+    parser.add_argument(
+        "--skip-somef",
+        action="store_true",
+        help="Skip SoMEF execution and analyze existing SoMEF output files directly. --input should point to SoMEF JSON files."
+    )
+    parser.add_argument(
+        "--pitfalls-output",
+        default=os.path.join(os.getcwd(), "pitfalls_outputs"),
+        help="Directory to store pitfall JSON-LD files (default: ./pitfalls_outputs)."
+    )
+    parser.add_argument(
+        "--analysis-output",
+        default=os.path.join(os.getcwd(), "analysis_results.json"),
+        help="File path for summary results (default: ./analysis_results.json)."
+    )
+    parser.add_argument(
+        "--threshold",
+        type=float,
+        default=0.8,
+        help="SoMEF confidence threshold (default: 0.8). Only used when running SoMEF."
+    )
+
+    args = parser.parse_args()
+
+    if args.skip_somef:
+        print(f"Skipping SoMEF execution. Analyzing {len(args.input)} existing SoMEF output files...")
+
+        somef_json_paths = []
+        for json_path in args.input:
+            if not os.path.exists(json_path):
+                print(f"Warning: File not found, skipping: {json_path}")
+                continue
+            somef_json_paths.append(Path(json_path))
+
+        if not somef_json_paths:
+            print("Error: No valid SoMEF output files found.")
+            return
+
+        print(f"Analyzing {len(somef_json_paths)} SoMEF output files...")
+        run_analysis(somef_json_paths, args.pitfalls_output, args.analysis_output)
+
+    else:
+        threshold = args.threshold
+        somef_output_dir = os.path.join(os.getcwd(), "somef_outputs")
+
+        print(f"Detected {len(args.input)} input files:")
+        for json_path in args.input:
+            if not os.path.exists(json_path):
+                print(f"Skipping missing file: {json_path}")
+                continue
+            print(f"Processing repositories from {json_path}")
+            run_somef_batch(json_path, somef_output_dir, threshold)
+
+        run_analysis(somef_output_dir, args.pitfalls_output, args.analysis_output)
+
+
+if __name__ == "__main__":
+    print("!!!THIS IS THE CORRECT TEST VERSION (MSR26) FIXING ONLY W003!!!")
     cli()