Merge branch 'development'

Author: LocoDelAssembly

.dockerignore

@@ -49,3 +49,4 @@ public/assets
 spec
 .github
 k8s
+development

.gitignore

@@ -4,6 +4,8 @@
 # or operating system, you probably want to add a global ignore instead:
 #   git config --global core.excludesfile '~/.gitignore_global'
 
+.gitattributes
+
 *.dump
 
 .ctags
@@ -67,3 +69,7 @@ yarn-debug.log*
 taxonworks.code-workspace
 
 development
+_development/
+
+.claude/
+claude/

CHANGELOG.md

@@ -9,6 +9,42 @@ This project <em>does not yet</em> adheres to [Semantic Versioning](https://semv
 
 \-
 
+## [0.60.0] - 2026-02-20
+
+### Added
+
+- Match OTU by TaxonName task
+- DarwinCore summary task 
+- Report per-object duplicate predicate use [#4741]
+- Batch import BibTeX sources option to include Identifier
+- Batch Upload Asserted Distributions now supports a `gazetteer_id` column [#4739]
+- Lock header bar button [#4750]
+- Filter namespaces [#4749]
+
+### Fixed
+
+- Improved scoping of Catalogue of Life Exports
+- Save notice is missing in New type specimen task
+- Fix: Rails now correctly applies time zones for `user_date_start` and `user_date_end` parameters from the `X-Timezone` header [#4721]
+- Classes not being eager loaded in background jobs, causing dwc importer to fail
+- Admin checkboxes in project members table are not visible to project administrators.
+- Add historical determination options to Taxon Name facet of Filter Collection Objects [#4742]
+- Serial author match out of order when reopened after one match selected [#4743]
+
+### Changed
+
+- Removed unused BibTeX task [#1440]
+- Updated Ruby gems
+
+[#4741]: https://github.com/SpeciesFileGroup/taxonworks/issues/4741
+[#4742]: https://github.com/SpeciesFileGroup/taxonworks/issues/4742
+[#1440]: https://github.com/SpeciesFileGroup/taxonworks/issues/1440
+[#4721]: https://github.com/SpeciesFileGroup/taxonworks/issues/4721
+[#4739]: https://github.com/SpeciesFileGroup/taxonworks/issues/4739
+[#4743]: https://github.com/SpeciesFileGroup/taxonworks/issues/4743
+[#4749]: https://github.com/SpeciesFileGroup/taxonworks/issues/4749
+[#4750]: https://github.com/SpeciesFileGroup/taxonworks/issues/4750
+
 ## [0.59.0] - 2026-02-04
 
 ### Added
@@ -6062,8 +6098,9 @@ _Special thanks to Tom Klein for his amazing open-source contributions on this r
 - Loosing input page numbers when switching tabs on New Taxon Name task
 
 [#1532]: https://github.com/SpeciesFileGroup/taxonworks/issues/1532
-[unreleased]: https://github.com/SpeciesFileGroup/taxonworks/compare/v0.59.0...development
-[0.58.0]: https://github.com/SpeciesFileGroup/taxonworks/compare/v0.58.0...v0.59.0
+[unreleased]: https://github.com/SpeciesFileGroup/taxonworks/compare/v0.60.0...development
+[0.60.0]: https://github.com/SpeciesFileGroup/taxonworks/compare/v0.59.0...v0.60.0
+[0.59.0]: https://github.com/SpeciesFileGroup/taxonworks/compare/v0.58.0...v0.59.0
 [0.58.0]: https://github.com/SpeciesFileGroup/taxonworks/compare/v0.57.0...v0.58.0
 [0.57.0]: https://github.com/SpeciesFileGroup/taxonworks/compare/v0.56.1...v0.57.0
 [0.56.1]: https://github.com/SpeciesFileGroup/taxonworks/compare/v0.56.0...v0.56.1

CLAUDE.md

@@ -19,8 +19,6 @@ TaxonWorks is a Biodiversity Informatics workbench.
 - Queries and filters `lib/queries/ARCHITECTURE.md`
 - Exports: `lib/export/ARCHITECTURE.md`
 
-
-
 ### Application
 - Both server-side and client-side rendering are used
 - Vue.js 3 is used for CS, e.g. `app/javascript/vue/` for Vue.js components and single-page applications
@@ -41,30 +39,30 @@ TaxonWorks is a Biodiversity Informatics workbench.
 
 ## Code
 - DO us a comment when you have provide > 50% of the code for a class " 
-- Follow Conventions in ARCHITECTURE.md
-- When requesting clarification from a user, propose to add it to an ARCHITECTURE.md file if it appears systematic
+- DO follow conventions in ARCHITECTURE.md
+- When requesting clarification from a user, propose to add it to an ARCHITECTURE.md file if it appears systemic
 
 ### Syntax
-- Always prefer verbose method and variable names
-- Variable name abbreviation permitted in loops and simple assignments within methods
-- Only `sv_`, soft validation methods are allowed to be abbreviated
+- DO prefer verbose method and variable names
+- DO permit abbreviated variable names in loops and simple assignments within methods
+- DO NOT change quoting format unless specifically asked to
+- DO allow `sv_` abbreviation in soft validation methods
 
 ### New TaxonWorks Tasks
-- Task are nested within Rails conventions in `tasks/`, e.g. `app/controllers/tasks/`
 - Initialize with generator, see `rails generate taxon_works:task --help`
 - Then write a headless functional test that reaches page without a 404
+- Task are nested within Rails conventions in `tasks/`, e.g. `app/controllers/tasks/`
 
 ## Tests
 - Use `rspec` - `rspec path/to/test_spec.rb`
-- Tests facilitate developing complex processes
-- DO tend to write a test first, have it fail (RED), then make it pass (GREEN) when:
-  - Work is complex
-  - Work is on a model
-  - Work is in lib/
+- DO tend to test first, have it fail (RED), then make it pass (GREEN) when:
+  - Work is COMPLEX
+  - Work is on a MODEL
+  - Work is in `lib/`
   - At the start of adding a new resource/route/page
 - DO reference Factories 
   - All models have a corresponding `valid_<model>` factory
-- NEVER write Controller tests by default
+- NEVER write Controller tests unless asked to
 
 ## Git
 - DO NOT try to commit unless asked

Gemfile.lock

@@ -158,11 +158,11 @@ GEM
       racc (~> 1.7)
     bigdecimal (3.3.1)
     bindex (0.8.1)
-    binding_of_caller (1.0.1)
+    binding_of_caller (2.0.0)
       debug_inspector (>= 1.2.0)
     biodiversity (6.0.1)
       ffi (~> 1.15)
-    bootsnap (1.22.0)
+    bootsnap (1.23.0)
       msgpack (~> 1.2)
     brakeman (7.1.2)
       racc
@@ -258,7 +258,7 @@ GEM
       railties (>= 6.1.0)
     faker (3.6.0)
       i18n (>= 1.8.11, < 2)
-    faraday (2.14.0)
+    faraday (2.14.1)
       faraday-net_http (>= 2.0, < 3.5)
       json
       logger
@@ -288,7 +288,7 @@ GEM
       activesupport (>= 6.1)
     gnfinder (1.0.4)
       rest-client (~> 2.1)
-    gpx (1.2.1)
+    gpx (1.2.2)
       csv
       nokogiri (~> 1.7)
       rake
@@ -325,8 +325,9 @@ GEM
     indefinite_article (0.2.5)
       activesupport
     io-console (0.8.2)
-    irb (1.16.0)
+    irb (1.17.0)
       pp (>= 0.6.0)
+      prism (>= 1.3.0)
       rdoc (>= 4.0.0)
       reline (>= 0.4.2)
     jbuilder (2.14.1)
@@ -401,7 +402,7 @@ GEM
     nenv (0.3.0)
     net-http (0.9.1)
       uri (>= 0.11.1)
-    net-imap (0.6.2)
+    net-imap (0.6.3)
       date
       net-protocol
     net-pop (0.1.2)
@@ -413,24 +414,24 @@ GEM
     netrc (0.11.0)
     nexus_parser (1.2.3)
     nio4r (2.7.5)
-    nokogiri (1.19.0)
+    nokogiri (1.19.1)
       mini_portile2 (~> 2.8.2)
       racc (~> 1.4)
-    nokogiri (1.19.0-aarch64-linux-gnu)
+    nokogiri (1.19.1-aarch64-linux-gnu)
       racc (~> 1.4)
-    nokogiri (1.19.0-aarch64-linux-musl)
+    nokogiri (1.19.1-aarch64-linux-musl)
       racc (~> 1.4)
-    nokogiri (1.19.0-arm-linux-gnu)
+    nokogiri (1.19.1-arm-linux-gnu)
       racc (~> 1.4)
-    nokogiri (1.19.0-arm-linux-musl)
+    nokogiri (1.19.1-arm-linux-musl)
       racc (~> 1.4)
-    nokogiri (1.19.0-arm64-darwin)
+    nokogiri (1.19.1-arm64-darwin)
       racc (~> 1.4)
-    nokogiri (1.19.0-x86_64-darwin)
+    nokogiri (1.19.1-x86_64-darwin)
       racc (~> 1.4)
-    nokogiri (1.19.0-x86_64-linux-gnu)
+    nokogiri (1.19.1-x86_64-linux-gnu)
       racc (~> 1.4)
-    nokogiri (1.19.0-x86_64-linux-musl)
+    nokogiri (1.19.1-x86_64-linux-musl)
       racc (~> 1.4)
     notiffany (0.1.3)
       nenv (~> 0.1)
@@ -447,9 +448,9 @@ GEM
       activerecord (>= 7.1)
       request_store (~> 1.4)
     parallel (1.27.0)
-    parallel_tests (5.5.0)
+    parallel_tests (5.6.0)
       parallel
-    parser (3.3.10.1)
+    parser (3.3.10.2)
       ast (~> 2.4.1)
       racc
     parslet (2.0.0)
@@ -498,7 +499,7 @@ GEM
     puma (7.2.0)
       nio4r (~> 2.0)
     racc (1.8.1)
-    rack (3.2.4)
+    rack (3.2.5)
     rack-cors (3.0.0)
       logger
       rack (>= 3.0.14)
@@ -561,7 +562,7 @@ GEM
       logger (~> 1.5)
       ostruct (~> 0.6)
       readline (~> 0.0)
-    rdoc (7.1.0)
+    rdoc (7.2.0)
       erb
       psych (>= 4.0.0)
       tsort
@@ -628,7 +629,7 @@ GEM
     rspec-mocks (3.13.7)
       diff-lcs (>= 1.2.0, < 2.0)
       rspec-support (~> 3.13.0)
-    rspec-rails (8.0.2)
+    rspec-rails (8.0.3)
       actionpack (>= 7.2)
       activesupport (>= 7.2)
       railties (>= 7.2)
@@ -638,7 +639,7 @@ GEM
       rspec-support (~> 3.13)
     rspec-support (3.13.7)
     rtesseract (3.1.4)
-    rubocop (1.84.1)
+    rubocop (1.84.2)
       json (~> 2.3)
       language_server-protocol (~> 3.17.0.2)
       lint_roller (~> 1.1.0)
@@ -691,7 +692,7 @@ GEM
     securerandom (0.4.1)
     seedbank (0.5.0)
       rake (>= 10.0)
-    selenium-webdriver (4.40.0)
+    selenium-webdriver (4.41.0)
       base64 (~> 0.2)
       logger (~> 1.4)
       rexml (~> 3.2, >= 3.2.5)
@@ -815,7 +816,7 @@ GEM
     xpath (3.2.0)
       nokogiri (~> 1.8)
     zaru (1.0.1)
-    zeitwerk (2.7.4)
+    zeitwerk (2.7.5)
     zip_tricks (5.6.0)
 
 PLATFORMS

app/assets/javascripts/workbench/keyboard.js

@@ -39,29 +39,58 @@ Object.assign(TW.workbench.keyboard, {
     this.handleEvents()
   },
 
+  // General shortcuts use a plain keydown listener instead of Mousetrap so
+  // they work even when focus is in an input, select, or textarea.
+  // platformKey() is Alt on Linux/Windows, Ctrl on Mac.
+  // See app/javascript/vue/helpers/getPlatformKey.js.
   generalShortcuts() {
-    const platformKey = navigator.platform.indexOf('Mac') > -1 ? 'ctrl' : 'alt'
-
-    this.createShortcut(
-      `${platformKey}+h`,
-      'Go to hub',
-      'General shortcuts',
-      function () {
-        const element = document.querySelector('.hub_project_name')
-        element.click()
+    const isMac = navigator.platform.indexOf('Mac') > -1
+    const platformKey = isMac ? 'ctrl' : 'alt'
+    const modifierProp = isMac ? 'ctrlKey' : 'altKey'
+
+    const shortcuts = [
+      {
+        key: 'h',
+        legend: `${platformKey}+h`,
+        description: 'Go to hub',
+        handler() {
+          const element = document.querySelector('.hub_project_name')
+          element.click()
+        }
       },
-      true
-    )
-    this.createShortcut(
-      `${platformKey}+?`,
-      'Show/hide help',
-      'General shortcuts',
-      function () {
-        const element = document.querySelector('.help-button')
-        element.click()
-      },
-      true
-    )
+      {
+        key: '?',
+        legend: `${platformKey}+?`,
+        description: 'Show/hide help',
+        handler() {
+          const element = document.querySelector('.help-button')
+          element.click()
+        }
+      }
+    ]
+
+    shortcuts.forEach((shortcut) => {
+      const legendElement = this.createLegendElement(
+        shortcut.legend,
+        shortcut.description,
+        'General shortcuts',
+        true
+      )
+
+      document.body.append(legendElement)
+    })
+
+    this._keydownListener = (e) => {
+      if (!e[modifierProp]) return
+
+      const match = shortcuts.find((s) => s.key === e.key)
+      if (match) {
+        e.preventDefault()
+        match.handler()
+      }
+    }
+
+    window.addEventListener('keydown', this._keydownListener)
   },
 
   createTable() {
@@ -251,3 +280,13 @@ document.addEventListener('turbolinks:load', () => {
   TW.workbench.help.init()
   TW.workbench.keyboard.init_keyShortcuts()
 })
+
+document.addEventListener('turbolinks:before-cache', () => {
+  if (TW.workbench.keyboard._keydownListener) {
+    window.removeEventListener(
+      'keydown',
+      TW.workbench.keyboard._keydownListener
+    )
+    TW.workbench.keyboard._keydownListener = null
+  }
+})