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[NEW PROJECT]: support for SiNAPS probes and data formats #26

@NinelK

Description

@NinelK

Project title: support for SiNAPS probes and data formats

Key Investigators

  • Nina Kudryashova
  • Matteo Vincenzi
  • Alessio ?

Project Description

Add support for SiNAPS probes (via probeinterface), data formats (partially done with *.bin and *.h5 extractors for SiNAPS).
Potentially: check drift and drift correction for these probes.

Background

SiNAPS probes are high-channel count, active electrodes, similar to other silicon active probes available and popular today (E.g., NeuroPixels)1. They are currently not supported by Spikeinterface, but we started developing data extractors for the probe.

Objectives

  • Add support for SiNAPS data formats
  • Add support for SiNAPS research probes
  • Add tools for addressing SiNAPS-specific issues (e.g. amplification artefacts)
  • Bad channel detection
  • Drift correction

Approach and Plan

  • Test the extractors
  • Test probeinterface probes and add to spikeinterface
  • Discuss SiNAPS-specific amplification artefacts and approaches to masking them out for SI
  • Analyse drift and drift correction on these large probes?

References

Footnotes

  1. https://plexon.com/products/sinaps/

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