Test: combinato runs but fails with toy data

Author: vncntprvst

combinato/Dockerfile

@@ -5,7 +5,8 @@ LABEL maintainer="Vincent Prevosto <[email protected]>"
 # Ubuntu package installs
 RUN apt update && \
     apt install -y --no-install-recommends \
-    git && \
+    git \
+    nano && \
     apt clean && \
     rm -rf /var/lib/apt/lists/*
 
@@ -27,10 +28,10 @@ RUN git clone https://github.com/jniediek/combinato.git
 ENV COMBINATO_DIR /src/combinato
 ENV PATH=$PATH:$COMBINATO_DIR
 ENV PYTHONPATH=$PYTHONPATH:/usr/local/bin/python3:$COMBINATO_DIR
-RUN echo $' \n\
-    PATH=$PATH:/src/combinato \n\
-    PYTHONPATH=$PYTHONPATH:/usr/local/bin/python3:$COMBINATO_DIR \n\
-    export PATH PYTHONPATH  ' >> /root/.bashrc
+RUN echo '\n\
+export PATH=$PATH:/src/combinato\n\
+export PYTHONPATH=$PYTHONPATH:/usr/local/bin/python3:/src/combinato\n\
+export COMBINATO_PATH=/src/combinato' >> /root/.bashrc
 
 # Install Combinato
 WORKDIR /src/combinato

combinato/README.md

@@ -3,11 +3,12 @@ Build default image:
 docker build -t combinato:latest .
 
 ### Run container in bash
-docker run --rm -it -v <host-data-folder>:<docker-data-folder> spikeinterface/combinato /bin/sh
+docker run --rm -it -v <host-data-folder>:<docker-data-folder> spikeinterface/combinato-base /bin/sh
 flags:
 --rm: removes container once it's stopped
 -it: for interactive session
 -v: mounted volumes (directories)
 
 ### Test
+docker run --rm -it spikeinterface/combinato-base /bin/sh
 python3 tools/test_installation.py