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Remove build
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.github/workflows/test_containers_singularity.yml

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@@ -4,32 +4,9 @@ on:
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workflow_dispatch:
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jobs:
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docker-build-images:
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name: Docker build
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runs-on: "ubuntu-latest"
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steps:
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- name: Checkout
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uses: actions/checkout@v3
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- name: Build Tridesclous Docker image
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run: |
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cd tridesclous
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bash build.sh
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cd ..
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mkdir -p output/docker_images
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docker save spikeinterface/tridesclous-base:latest > output/docker_images/tridesclous-image.tar
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- name: Temporarily save Docker Image
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uses: actions/upload-artifact@v2
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with:
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name: docker-artifact
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path: output/docker_images
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retention-days: 1
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test-images:
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name: Test on (${{ matrix.os }})
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runs-on: ${{ matrix.os }}
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needs: docker-build-images
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strategy:
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fail-fast: false
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matrix:
@@ -39,25 +16,16 @@ jobs:
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- uses: actions/checkout@v3
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with:
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python-version: 3.8
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- uses: eWaterCycle/setup-singularity@v7
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with:
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singularity-version: 3.8.3
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- name: Retrieve saved Docker image
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uses: actions/download-artifact@v2
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with:
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name: docker-artifact
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path: output/docker_images
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- name: Install dependencies
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run: |
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sudo apt update
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sudo apt install git
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pip install tridesclous
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pip install -r requirements_test.txt
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- name: Docker Load
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run: docker load < output/docker_images/tridesclous-image.tar
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- name: Test tridesclous image
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run: |
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pip install tridesclous
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pytest -sv tests/test_singularity_containers.py::test_tridesclous
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# - name: Test spyking-circus image
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# run: pytest -sv tests/test_singularity_containers.py::test_spyking_circus
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pytest -sv tests/test_singularity_containers.pytest_tridesclous

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