ENCODE data submission: WTC11 NGN2 Diff for cs-561 and cs-562

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JDP2

https://pulsar-encode.herokuapp.com/chipseq_experiments/561
https://pulsar-encode.herokuapp.com/chipseq_experiments/562

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561 https://www.encodeproject.org/experiments/ENCSR289TGP
562 https://www.encodeproject.org/experiments/ENCSR506EMU

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0. submission w/ code for each experiment
1. link biosamples: 1 is the parent of 3 and 2 is the parent of 4. (manual)

• add 1 as “originated_from” for 3
• add 2 as “originated_from” for 4, rep1 for rep1, rep2 for rep2

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2. GMs submission:
   a. 1 (GM1_on_ENCODE_portal = ENCGM156EZW)
   b. 2 (ENCGM156EZW, GM2_in_Pulsar)
   c. 3 (ENCGM156EZW)
   d. 4 (ENCGM156EZW, GM2_in_Pulsar)
3. IP submission for rep1 and rep2 of 2 and 4 respectively (code)

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Post GM

5. Biosample ontology submission: "biosample_ontology": "/biosample-types/in_vitro_differentiated_cells_CL_0008030/" for
   a. biosamples in 3 and 4