pecotmr/pixi.toml at main · StatFunGen/pecotmr · GitHub

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[project]
name = "r-pecotmr"
channels = ["dnachun", "conda-forge", "bioconda"]
platforms = ["linux-64", "osx-arm64"]

[system-requirements]
libc = { family="glibc", version="2.17" }

[tasks]
devtools_document = "cd $GITHUB_WORKSPACE; R -e 'devtools::document()'"
devtools_test = "cd $GITHUB_WORKSPACE; R -e 'devtools::test()'"
codecov = "cd $GITHUB_WORKSPACE; R -e 'covr::codecov(quiet = FALSE)'"
rcmdcheck = "cd $GITHUB_WORKSPACE; R -e 'rcmdcheck::rcmdcheck()'"
bioccheck_git_clone = "cd $GITHUB_WORKSPACE; R -e 'BiocCheck::BiocCheckGitClone()'"
bioccheck = "cd $GITHUB_WORKSPACE; R -e 'BiocCheck::BiocCheck()'"
use_major_version = "cd $GITHUB_WORKSPACE; R -e 'usethis::use_version(which = \"major\", push = FALSE)'"
use_minor_version = "cd $GITHUB_WORKSPACE; R -e 'usethis::use_version(which = \"minor\", push = FALSE)'"
use_patch_version = "cd $GITHUB_WORKSPACE; R -e 'usethis::use_version(which = \"patch\", push = FALSE)'"
pkgdown_build = "cd $GITHUB_WORKSPACE; R -e 'pkgdown::build_site_github_pages(new_process = FALSE, install = TRUE)'"

[feature.r44]
dependencies = {"r-base" = "4.4.*"}

[feature.r45]
dependencies = {"r-base" = "4.5.*"}

[environments]
r44 = {features = ["r44"]}
r45 = {features = ["r45"]}

[target.linux-64.dependencies]
"gcc" = "*"

[dependencies]
# "bioconductor-bioccheck" = "*"
"r-covr" = "*"
"r-devtools" = "*"
"r-knitr" = "*"
"r-markdown" = "*"
"r-pkgdown" = "*"
"r-rcmdcheck" = "*"
"r-testthat" = "*"
"r-tidyverse" = "*"
"bioconductor-iranges" = "*"
"bioconductor-qvalue" = "*"
"bioconductor-s4vectors" = "*"
"bioconductor-snpstats" = "*"
"r-base" = "*"
"r-bigsnpr" = "*"
"r-bigstatsr" = "*"
"r-coda" = "*"
"r-coloc" = "*"
"r-colocboost" = "*"
"r-dofuture" = "*"
"r-dplyr" = "*"
"r-flashier" = "*"
"r-fsusier" = "*"
"r-furrr" = "*"
"r-future" = "*"
"r-gbj" = "*"
"r-glmnet" = "*"
"r-harmonicmeanp" = "*"
"r-magrittr" = "*"
"r-mashr" = "*"
"r-matrixstats" = "*"
"r-mr.mashr" = "*"
"r-mvsusier" = "*"
"r-pgenlibr" = "*"
"r-purrr" = "*"
"r-qgg" = "*"
"r-quadprog" = "*"
"r-quantreg" = "*"
"r-rcpp" = "*"
"r-rcpparmadillo" = "*"
"r-readr" = "*"
"r-rfast" = "*"
"r-rlang" = "*"
"r-stringr" = "*"
"r-susier" = "*"
"r-tibble" = "*"
"r-tidyr" = "*"
"r-vctrs" = "*"
"r-vroom" = "*"
"r-xicor" = "*"