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Implementation of 3d non-separable convolution using CUDA & FFT Convolution, originally implemented by Fernando Amat for our Nature Methods
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paper (http://www.nature.com/nmeth/journal/v11/n6/full/nmeth.2929.html).
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Implementation of 3d non-separable convolution using CUDA & FFT Convolution, originally implemented by Fernando Amat for our Nature Methods paper (http://www.nature.com/nmeth/journal/v11/n6/full/nmeth.2929.html).
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To compile this code under linux, use the following command (and adjust paths obviously):
To compile it under Linux/Mac using NSight, make a new shared library project. Under Project > Properties > NVCC Linker add -lcuda and -lcufft
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To compile it under Linux/Mac/Windows I suggest NSight. Clone this repository into your cuda-workspace directory. The make a new shared library project with the same name as the directory. Under Project > Properties > Build > Settings > Tool Settings > NVCC Linker add -lcuda and -lcufft
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to the command line pattern so that it looks like this:
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