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6 files changed

+4
-18
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filtered_point_process/Notebooks/Figure_Code_Bloniasz_et_al_2024/Figure_1c_and_result_5_post_review.ipynb

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@@ -348,7 +348,7 @@
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"\n",
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"from pathlib import Path\n",
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"\n",
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"SAVE_DIR = Path(\"/Users/patrick_bloniasz/filtered-point-process/filtered_point_process/Notebooks/Figure_Code_Bloniasz_et_al_2024/\")\n",
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"SAVE_DIR = Path(\".../filtered-point-process/filtered_point_process/Notebooks/Figure_Code_Bloniasz_et_al_2024/\")\n",
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"plt.savefig(SAVE_DIR / \"composite_theoretical_figure_final_new.svg\", bbox_inches=\"tight\", format=\"svg\")\n",
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"\n",
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"\n",
@@ -542,7 +542,7 @@
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"axR.tick_params(axis=\"y\", labelsize=35)\n",
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"axR.legend(fontsize=14, loc=\"upper right\", frameon=False)\n",
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"\n",
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"SAVE_DIR = Path(\"/Users/patrick_bloniasz/filtered-point-process/filtered_point_process/Notebooks/Figure_Code_Bloniasz_et_al_2024/\")\n",
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"SAVE_DIR = Path(\".../filtered-point-process/filtered_point_process/Notebooks/Figure_Code_Bloniasz_et_al_2024/\")\n",
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"plt.savefig(SAVE_DIR / \"Figure_6_new.svg\", bbox_inches=\"tight\", format=\"svg\")\n",
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"\n",
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"\n",

filtered_point_process/Notebooks/Figure_Code_Bloniasz_et_al_2024/Figure_2C_post_review.ipynb

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@@ -430,8 +430,6 @@
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" ax.yaxis.offsetText.set_horizontalalignment(\"right\")\n",
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"\n",
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"fig.subplots_adjust(hspace=0.38, wspace=0.38)\n",
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"#plt.savefig('/Users/patrick_bloniasz/filtered-point-process/filtered_point_process/Notebooks/Figures_Bloniasz_et_al_2024/Figure_2_PR.svg')\n",
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"#plt.savefig('/Users/patrick_bloniasz/filtered-point-process/filtered_point_process/Notebooks/Figures_Bloniasz_et_al_2024/Figure_2_PR.png', dpi = 300)\n",
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"plt.show()"
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]
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},
@@ -479,7 +477,7 @@
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"fig_mid.subplots_adjust(wspace=0.38)\n",
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"\n",
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"# save under a distinct name\n",
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"outdir = '/Users/patrick_bloniasz/filtered-point-process/filtered_point_process/Notebooks/Figures_Bloniasz_et_al_2024'\n",
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"outdir = '...'\n",
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"plt.savefig(f'{outdir}/Figure_2_middle_panels.svg')\n",
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"plt.savefig(f'{outdir}/Figure_2_middle_panels.png', dpi=300)\n",
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"plt.show()\n"

filtered_point_process/Notebooks/Figure_Code_Bloniasz_et_al_2024/Figure_3A_post_review.ipynb

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@@ -171,8 +171,6 @@
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" ax.spines[\"right\"].set_visible(False)\n",
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"\n",
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"plt.tight_layout()\n",
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"plt.savefig('/Users/patrick_bloniasz/filtered-point-process/filtered_point_process/Notebooks/Figures_Bloniasz_et_al_2024/Figure_3A_PR.svg')\n",
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"plt.savefig('/Users/patrick_bloniasz/filtered-point-process/filtered_point_process/Notebooks/Figures_Bloniasz_et_al_2024/Figure_3A_PR.png', dpi = 300)\n",
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"plt.show()\n"
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]
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},

filtered_point_process/Notebooks/Figure_Code_Bloniasz_et_al_2024/Figure_3B_post_review.ipynb

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" start = i\n",
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" print(f\"Panel {idx} dashed‐line x‐positions: {', '.join(f'{x:.3f}' for x in xs)} Hz\")\n",
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" \n",
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"plt.savefig('/Users/patrick_bloniasz/filtered-point-process/filtered_point_process/Notebooks/Figures_Bloniasz_et_al_2024/Figure_3B_PR.svg')\n",
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"plt.savefig('/Users/patrick_bloniasz/filtered-point-process/filtered_point_process/Notebooks/Figures_Bloniasz_et_al_2024/Figure_3B_PR.png', dpi = 300)\n",
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"plt.show()\n"
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]
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},

filtered_point_process/Notebooks/Figure_Code_Bloniasz_et_al_2024/Figure_4_post_review.ipynb

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"ax.spines[\"top\"].set_visible(False)\n",
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"ax.spines[\"right\"].set_visible(False)\n",
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"plt.tight_layout()\n",
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"plt.savefig('/Users/patrick_bloniasz/filtered-point-process/filtered_point_process/Notebooks/Figures_Bloniasz_et_al_2024/Figure_4A_PR.svg')\n",
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"plt.savefig('/Users/patrick_bloniasz/filtered-point-process/filtered_point_process/Notebooks/Figures_Bloniasz_et_al_2024/Figure_4A_PR.png', dpi = 300)\n",
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"plt.show()\n"
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]
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},
@@ -427,8 +425,6 @@
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" #ax.legend(loc=\"lower left\")\n",
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"\n",
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"plt.tight_layout()\n",
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"plt.savefig('/Users/patrick_bloniasz/filtered-point-process/filtered_point_process/Notebooks/Figures_Bloniasz_et_al_2024/Figure_4B_PR.svg')\n",
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"plt.savefig('/Users/patrick_bloniasz/filtered-point-process/filtered_point_process/Notebooks/Figures_Bloniasz_et_al_2024/Figure_4B_PR.png', dpi = 300)\n",
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"plt.show()\n"
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]
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},

filtered_point_process/Notebooks/Figure_Code_Bloniasz_et_al_2024/Figure_5_post_review.ipynb

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@@ -1069,7 +1069,7 @@
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"freq_index_80Hz = np.argmin(np.abs(freqs - 80)) \n",
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"power_at_80Hz = np.real(\n",
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" overall_spectrum[:, freq_index_80Hz]\n",
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") # Extract power values over time\n",
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") \n",
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"\n",
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"# Plot power at 80 Hz on the twin y-axis\n",
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"ax6_power.plot(\n",
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"plt.subplots_adjust(hspace=0.4)\n",
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"plt.subplots_adjust(wspace=0.3)\n",
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"\n",
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"plt.savefig('/Users/patrick_bloniasz/filtered-point-process/filtered_point_process/Notebooks/Figures_Bloniasz_et_al_2024/Figure_5_PR.svg')\n",
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"plt.savefig('/Users/patrick_bloniasz/filtered-point-process/filtered_point_process/Notebooks/Figures_Bloniasz_et_al_2024/Figure_5_PR.png', dpi = 300)\n",
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"\n",
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"plt.show()"
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]
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"cbar1 = fig.colorbar(cax3, cax=ax_cbar1, orientation=\"vertical\")\n",
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"cbar1.set_ticks([-12, -11, -10, -9, -8, -7, -6, -5])\n",
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"cbar1.set_ticklabels([f\"$10^{{{int(tick)}}}$\" for tick in cbar1.get_ticks()])\n",
1169-
"plt.savefig('/Users/patrick_bloniasz/filtered-point-process/filtered_point_process/Notebooks/Figures_Bloniasz_et_al_2024/color_bar_2_fig_5.svg')\n",
1170-
"plt.savefig('/Users/patrick_bloniasz/filtered-point-process/filtered_point_process/Notebooks/Figures_Bloniasz_et_al_2024/color_bar_2_fig_5.png', dpi = 300)\n",
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"plt.show()\n",
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"\n",
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"# Normalized Spectrogram Color Bar (for ax5)\n",

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