upddated paths

Author: bloniaszp

filtered_point_process/Notebooks/Figure_Code_Bloniasz_et_al_2024/Figure_1c_and_result_5_post_review.ipynb

@@ -348,7 +348,7 @@
     "\n",
     "from pathlib import Path\n",
     "\n",
-    "SAVE_DIR = Path(\"/Users/patrick_bloniasz/filtered-point-process/filtered_point_process/Notebooks/Figure_Code_Bloniasz_et_al_2024/\")\n",
+    "SAVE_DIR = Path(\".../filtered-point-process/filtered_point_process/Notebooks/Figure_Code_Bloniasz_et_al_2024/\")\n",
     "plt.savefig(SAVE_DIR / \"composite_theoretical_figure_final_new.svg\", bbox_inches=\"tight\", format=\"svg\")\n",
     "\n",
     "\n",
@@ -542,7 +542,7 @@
     "axR.tick_params(axis=\"y\", labelsize=35)\n",
     "axR.legend(fontsize=14, loc=\"upper right\", frameon=False)\n",
     "\n",
-    "SAVE_DIR = Path(\"/Users/patrick_bloniasz/filtered-point-process/filtered_point_process/Notebooks/Figure_Code_Bloniasz_et_al_2024/\")\n",
+    "SAVE_DIR = Path(\".../filtered-point-process/filtered_point_process/Notebooks/Figure_Code_Bloniasz_et_al_2024/\")\n",
     "plt.savefig(SAVE_DIR / \"Figure_6_new.svg\", bbox_inches=\"tight\", format=\"svg\")\n",
     "\n",
     "\n",

filtered_point_process/Notebooks/Figure_Code_Bloniasz_et_al_2024/Figure_2C_post_review.ipynb

@@ -430,8 +430,6 @@
         "            ax.yaxis.offsetText.set_horizontalalignment(\"right\")\n",
         "\n",
         "fig.subplots_adjust(hspace=0.38, wspace=0.38)\n",
-        "#plt.savefig('/Users/patrick_bloniasz/filtered-point-process/filtered_point_process/Notebooks/Figures_Bloniasz_et_al_2024/Figure_2_PR.svg')\n",
-        "#plt.savefig('/Users/patrick_bloniasz/filtered-point-process/filtered_point_process/Notebooks/Figures_Bloniasz_et_al_2024/Figure_2_PR.png', dpi = 300)\n",
         "plt.show()"
       ]
     },
@@ -479,7 +477,7 @@
         "fig_mid.subplots_adjust(wspace=0.38)\n",
         "\n",
         "# save under a distinct name\n",
-        "outdir = '/Users/patrick_bloniasz/filtered-point-process/filtered_point_process/Notebooks/Figures_Bloniasz_et_al_2024'\n",
+        "outdir = '...'\n",
         "plt.savefig(f'{outdir}/Figure_2_middle_panels.svg')\n",
         "plt.savefig(f'{outdir}/Figure_2_middle_panels.png', dpi=300)\n",
         "plt.show()\n"

filtered_point_process/Notebooks/Figure_Code_Bloniasz_et_al_2024/Figure_3A_post_review.ipynb

@@ -171,8 +171,6 @@
     "    ax.spines[\"right\"].set_visible(False)\n",
     "\n",
     "plt.tight_layout()\n",
-    "plt.savefig('/Users/patrick_bloniasz/filtered-point-process/filtered_point_process/Notebooks/Figures_Bloniasz_et_al_2024/Figure_3A_PR.svg')\n",
-    "plt.savefig('/Users/patrick_bloniasz/filtered-point-process/filtered_point_process/Notebooks/Figures_Bloniasz_et_al_2024/Figure_3A_PR.png', dpi = 300)\n",
     "plt.show()\n"
    ]
   },

filtered_point_process/Notebooks/Figure_Code_Bloniasz_et_al_2024/Figure_3B_post_review.ipynb

@@ -218,8 +218,6 @@
         "            start = i\n",
         "    print(f\"Panel {idx} dashed‐line x‐positions: {', '.join(f'{x:.3f}' for x in xs)} Hz\")\n",
         "    \n",
-        "plt.savefig('/Users/patrick_bloniasz/filtered-point-process/filtered_point_process/Notebooks/Figures_Bloniasz_et_al_2024/Figure_3B_PR.svg')\n",
-        "plt.savefig('/Users/patrick_bloniasz/filtered-point-process/filtered_point_process/Notebooks/Figures_Bloniasz_et_al_2024/Figure_3B_PR.png', dpi = 300)\n",
         "plt.show()\n"
       ]
     },

filtered_point_process/Notebooks/Figure_Code_Bloniasz_et_al_2024/Figure_4_post_review.ipynb

@@ -103,8 +103,6 @@
     "ax.spines[\"top\"].set_visible(False)\n",
     "ax.spines[\"right\"].set_visible(False)\n",
     "plt.tight_layout()\n",
-    "plt.savefig('/Users/patrick_bloniasz/filtered-point-process/filtered_point_process/Notebooks/Figures_Bloniasz_et_al_2024/Figure_4A_PR.svg')\n",
-    "plt.savefig('/Users/patrick_bloniasz/filtered-point-process/filtered_point_process/Notebooks/Figures_Bloniasz_et_al_2024/Figure_4A_PR.png', dpi = 300)\n",
     "plt.show()\n"
    ]
   },
@@ -427,8 +425,6 @@
     "    #ax.legend(loc=\"lower left\")\n",
     "\n",
     "plt.tight_layout()\n",
-    "plt.savefig('/Users/patrick_bloniasz/filtered-point-process/filtered_point_process/Notebooks/Figures_Bloniasz_et_al_2024/Figure_4B_PR.svg')\n",
-    "plt.savefig('/Users/patrick_bloniasz/filtered-point-process/filtered_point_process/Notebooks/Figures_Bloniasz_et_al_2024/Figure_4B_PR.png', dpi = 300)\n",
     "plt.show()\n"
    ]
   },

filtered_point_process/Notebooks/Figure_Code_Bloniasz_et_al_2024/Figure_5_post_review.ipynb

@@ -1069,7 +1069,7 @@
     "freq_index_80Hz = np.argmin(np.abs(freqs - 80))  \n",
     "power_at_80Hz = np.real(\n",
     "    overall_spectrum[:, freq_index_80Hz]\n",
-    ")  # Extract power values over time\n",
+    ")  \n",
     "\n",
     "# Plot power at 80 Hz on the twin y-axis\n",
     "ax6_power.plot(\n",
@@ -1128,8 +1128,6 @@
     "plt.subplots_adjust(hspace=0.4)\n",
     "plt.subplots_adjust(wspace=0.3)\n",
     "\n",
-    "plt.savefig('/Users/patrick_bloniasz/filtered-point-process/filtered_point_process/Notebooks/Figures_Bloniasz_et_al_2024/Figure_5_PR.svg')\n",
-    "plt.savefig('/Users/patrick_bloniasz/filtered-point-process/filtered_point_process/Notebooks/Figures_Bloniasz_et_al_2024/Figure_5_PR.png', dpi = 300)\n",
     "\n",
     "plt.show()"
    ]
@@ -1166,8 +1164,6 @@
     "cbar1 = fig.colorbar(cax3, cax=ax_cbar1, orientation=\"vertical\")\n",
     "cbar1.set_ticks([-12, -11, -10, -9, -8, -7, -6, -5])\n",
     "cbar1.set_ticklabels([f\"$10^{{{int(tick)}}}$\" for tick in cbar1.get_ticks()])\n",
-    "plt.savefig('/Users/patrick_bloniasz/filtered-point-process/filtered_point_process/Notebooks/Figures_Bloniasz_et_al_2024/color_bar_2_fig_5.svg')\n",
-    "plt.savefig('/Users/patrick_bloniasz/filtered-point-process/filtered_point_process/Notebooks/Figures_Bloniasz_et_al_2024/color_bar_2_fig_5.png', dpi = 300)\n",
     "plt.show()\n",
     "\n",
     "# Normalized Spectrogram Color Bar (for ax5)\n",