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Updated docs.
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README.md

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@@ -49,14 +49,15 @@ to run 4Pipe4. If you are using linux you can get python 3 from you
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distribution's package manager (sudo apt-get install python3 for Ubuntu) or get
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it from the website (http://python.org/download/). Also required are the python3
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header files (the package name in Ubuntu is python3-dev).
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Due to the latest release of pysam, python >= 3.4 is now required.
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Not strictly required, but highly recommended to for best results are the
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external programs that 4Pipe4 uses in it's processes. By default, these are:
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* seqclean (http://compbio.dfci.harvard.edu/tgi/software/)
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* mira 4.x series (http://mira-assembler.sourceforge.net/)
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* getorf (http://emboss.sourceforge.net/apps/cvs/emboss/apps/getorf.html)
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* blast (ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/)
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* blast2go4pipe (http://www.blast2go.com/b2glaunch/resources)
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* blast2go4pipe (http://www.blast2go.com/b2glaunch/resources) - *Seems to have been discontinued*
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* etandem (http://helixweb.nih.gov/emboss/html/etandem.html)
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* 7zip (http://www.7-zip.org/)
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* pysam (https://github.com/pysam-developers/pysam)

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