Added set -e failsafes to scripts.

Author: StuntsPT

helper-scripts/database-downloader.sh

@@ -21,6 +21,8 @@
 #4Pipe4 that require these databases.
 
 #Define some variables:
+set -e
+set -o pipefail
 univec_url="ftp://ftp.ncbi.nih.gov/pub/UniVec/UniVec"
 nr_url="ftp://ftp.ncbi.nlm.nih.gov/blast/db/"
 

helper-scripts/emboss-user-installer.sh

@@ -19,6 +19,8 @@
 #required emboss programs to run 4Pipe4.
 
 #Define some variables:
+set -e
+set -o pipefail
 emboss_url="ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-6.6.0.tar.gz"
 
 #Create a working dir

helper-scripts/rc-generator.sh

@@ -19,6 +19,8 @@
 #the other helper scripts and generate a template for your 4Pipe4rc file.
 #You still have to fill things like the Univec database and the assmebly
 #parameters!
+set -e
+set -o pipefail
 
 workdir=~/Software
 datadir=~/Databases