Implemented a new field test for fastStructure.

Author: StuntsPT

tests/fastStructure_field_test.sh

@@ -0,0 +1,30 @@
+#!/bin/bash
+
+# Copyright 2016 Francisco Pina Martins <[email protected]>
+# This file is part of structure_threader.
+# structure_threader is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+
+# structure_threader is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+# GNU General Public License for more details.
+
+# You should have received a copy of the GNU General Public License
+# along with structure_threader. If not, see <http://www.gnu.org/licenses/>.
+
+set -e
+
+LightGreen='\033[1;32m'
+NoColor='\033[0m'
+echo "Runnig fastStructure 'field test'. This will simulate a full wrapped run on small test data."
+
+git_dir=`pwd`
+str_bin=`which fastStructure`
+
+tar xvfJ ${git_dir}/PTS/data/BigTestData.str.tar.xz -C ${git_dir}/PTS/data/
+~/virtualenv/python3.5/bin/structure_threader -i ${git_dir}/PTS/data/BigTestData.str -o ~/results_fs -fs ${str_bin} -K 4 -t 4
+
+echo -e "${LightGreen}fastStructure 'Field test' ran successfully. Yay!${NoColor}"