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Better PEP8 conformance.
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structure_threader/plotter/structplot.py

Lines changed: 5 additions & 5 deletions
Original file line numberDiff line numberDiff line change
@@ -834,16 +834,16 @@ def plotk(self, kvals, output_dir):
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'"Export to plot.ly"}', '')
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# Create html file
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with open(filepath, "w") as fh:
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fh.write(ploty_html(pdiv))
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with open(filepath, "w") as flh:
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flh.write(ploty_html(pdiv))
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def plotk_static(self, kval, output_dir, bw=False, use_ind=False):
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"""
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Generates a structure plot in svg format.
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:param kval: (int) Must match the K value from self.kvals
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:param output_dir: (string) Path of the plot file
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:param bw: (bool) If True, plots will be generated with patterns instead of
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colors to distinguish k groups.
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:param bw: (bool) If True, plots will be generated with patterns instead
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of colors to distinguish k groups.
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:param show_ind: (bool) If True, and if individual labels were provided
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with the --ind option, use those labels instead of population labels
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"""
@@ -973,7 +973,7 @@ def main(result_files, fmt, outdir, bestk=None, popfile=None, indfile=None,
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missing = [str(x) for x in filter_k if x not in klist.kvals]
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if missing:
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logging.warning("The following K values are missing: {}".format(
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" ".join(missing)))
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" ".join(missing)))
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else:
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filter_k = list(klist.kvals.keys())
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