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Corected the broken link on all of the documentation. Thanks, @briantrice.
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PTS/structure/downloads.xml

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<PhoronixTestSuite>
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<Downloads>
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<Package>
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<URL>http://pritchardlab.stanford.edu/structure_software/release_versions/v2.3.4/structure_kernel_source.tar.gz</URL>
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<URL>http://web.stanford.edu/group/pritchardlab/structure_software/release_versions/v2.3.4/structure_kernel_source.tar.gz</URL>
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<MD5>4e0591678cdbfe79347d272b5dceeda1</MD5>
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<FileSize>66375</FileSize>
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</Package>

PTS/structure/test-definition.xml

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<Status>Verified</Status>
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<ExternalDependencies>build-essential</ExternalDependencies>
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<EnvironmentSize>1.0</EnvironmentSize>
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<ProjectURL>http://pritchardlab.stanford.edu/structure.html</ProjectURL>
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<ProjectURL>http://web.stanford.edu/group/pritchardlab/structure.html</ProjectURL>
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<Maintainer>Francisco Pina-Martins</Maintainer>
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</TestProfile>
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</PhoronixTestSuite>

PTS/structure_threader-structure/downloads.xml

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<FileName>v0.1-rc3.tar.gz</FileName>
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</Package>
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<Package>
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<URL>http://pritchardlab.stanford.edu/structure_software/release_versions/v2.3.4/structure_kernel_source.tar.gz</URL>
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<URL>http://web.stanford.edu/group/pritchardlab/structure_software/release_versions/v2.3.4/structure_kernel_source.tar.gz</URL>
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<MD5>4e0591678cdbfe79347d272b5dceeda1</MD5>
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<FileSize>66375</FileSize>
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</Package>

PTS/structure_threader-structure_1/downloads.xml

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<FileName>v0.1-rc3.tar.gz</FileName>
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</Package>
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<Package>
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<URL>http://pritchardlab.stanford.edu/structure_software/release_versions/v2.3.4/structure_kernel_source.tar.gz</URL>
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<URL>http://web.stanford.edu/group/pritchardlab/structure_software/release_versions/v2.3.4/structure_kernel_source.tar.gz</URL>
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<MD5>4e0591678cdbfe79347d272b5dceeda1</MD5>
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<FileSize>66375</FileSize>
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</Package>

docs/binaries.md

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## STRUCTURE
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STRUCTURE is relatively simple to build. Source code can be obtained from the
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[STRUCTURE website](http://pritchardlab.stanford.edu/structure_software/release_versions/v2.3.4/structure_kernel_source.tar.gz). To build the binary, we used our helper
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[STRUCTURE website](http://web.stanford.edu/group/pritchardlab/structure_software/release_versions/v2.3.4/structure_kernel_source.tar.gz). To build the binary, we used our helper
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script "install_structure.sh". The binary version is 2.3.4.
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docs/index.md

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## Description
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A program to parallelize and automate the runs of [Structure](http://pritchardlab.stanford.edu/structure.html) and [fastStructure](https://rajanil.github.io/fastStructure/) software.
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A program to parallelize and automate the runs of [Structure](http://web.stanford.edu/group/pritchardlab/structure.html) and [fastStructure](https://rajanil.github.io/fastStructure/) software.
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## Requirements

docs/usage.md

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## fastStrucutre Warning:
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Keep in mind that *fastStructure* can take input in two distinct file formats:
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[Plink](http://pngu.mgh.harvard.edu/%7Epurcell/plink/data.shtml) and
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[structure](http://pritchardlab.stanford.edu/software/structure-data_v.2.3.1.html).
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[structure](http://web.stanford.edu/group/pritchardlab/software/structure-data_v.2.3.1.html).
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In order to use the PLINK format, three files are required:
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* `file.bed`

helper_scripts/install_structure.sh

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mkdir -p $tempdir
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# Download structure sources into temp dir
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wget http://pritchardlab.stanford.edu/structure_software/release_versions/v2.3.4/structure_kernel_source.tar.gz -O ${tempdir}/structure_kernel_source.tar.gz
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wget http://web.stanford.edu/group/pritchardlab/structure_software/release_versions/v2.3.4/structure_kernel_source.tar.gz -O ${tempdir}/structure_kernel_source.tar.gz
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# Extract tarball, enter src dir, build binary and place it in the install dir
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cd ${tempdir}

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