chore: fix coverage paths (#3004)

Author: Panaetius

.github/workflows/test_deploy.yml

@@ -309,6 +309,15 @@ jobs:
         run: |
           git config --global --add user.name "Renku Bot"
           git config --global --add user.email "[email protected]"
+      - name: Set coveralls path mapping
+        run: |
+          echo "
+
+          [tool.coverage.paths]
+          source = [
+              \"renku/\",
+              \"$(python -c 'import sysconfig; print(sysconfig.get_paths()["purelib"])')/renku/\"
+          ]" >> pyproject.toml
       - name: Test with pytest
         env:
           POETRY_VIRTUALENVS_CREATE: false
@@ -321,6 +330,7 @@ jobs:
           GITHUB_TOKEN: $COVERALLS_REPO_TOKEN
           RENKU_REQUESTS_TIMEOUT_SECONDS: 120
           COVERALLS_PARALLEL: true
+        if: always()
         run: coveralls --service=github-actions
         continue-on-error: true
 
@@ -367,6 +377,15 @@ jobs:
         run: |
           git config --global --add user.name "Renku Bot"
           git config --global --add user.email "[email protected]"
+      - name: Set coveralls path mapping
+        run: |
+          echo "
+
+          [tool.coverage.paths]
+          source = [
+              \"renku/\",
+              \"$(python -c 'import sysconfig; print(sysconfig.get_paths()["purelib"])')/renku/\"
+          ]" >> pyproject.toml
       - name: Test with pytest
         env:
           POETRY_VIRTUALENVS_CREATE: false
@@ -385,6 +404,7 @@ jobs:
           GITHUB_TOKEN: $COVERALLS_REPO_TOKEN
           RENKU_REQUESTS_TIMEOUT_SECONDS: 120
           COVERALLS_PARALLEL: true
+        if: always()
         run: coveralls --service=github-actions
         continue-on-error: true
 
@@ -431,6 +451,15 @@ jobs:
         run: |
           git config --global --add user.name "Renku Bot"
           git config --global --add user.email "[email protected]"
+      - name: Set coveralls path mapping
+        run: |
+          echo "
+
+          [tool.coverage.paths]
+          source = [
+              \"renku/\",
+              \"$(python -c 'import sysconfig; print(sysconfig.get_paths()["purelib"])')/renku/\"
+          ]" >> pyproject.toml
       - name: Test with pytest
         env:
           POETRY_VIRTUALENVS_CREATE: false
@@ -449,6 +478,7 @@ jobs:
           GITHUB_TOKEN: $COVERALLS_REPO_TOKEN
           RENKU_REQUESTS_TIMEOUT_SECONDS: 120
           COVERALLS_PARALLEL: true
+        if: always()
         run: coveralls --service=github-actions
         continue-on-error: true
 
@@ -495,6 +525,15 @@ jobs:
         run: |
           git config --global --add user.name "Renku Bot"
           git config --global --add user.email "[email protected]"
+      - name: Set coveralls path mapping
+        run: |
+          echo "
+
+          [tool.coverage.paths]
+          source = [
+              \"renku/\",
+              \"$(python -c 'import sysconfig; print(sysconfig.get_paths()["purelib"])')/renku/\"
+          ]" >> pyproject.toml
       - name: Test with pytest
         env:
           POETRY_VIRTUALENVS_CREATE: false
@@ -507,6 +546,7 @@ jobs:
           GITHUB_TOKEN: $COVERALLS_REPO_TOKEN
           RENKU_REQUESTS_TIMEOUT_SECONDS: 120
           COVERALLS_PARALLEL: true
+        if: always()
         run: coveralls --service=github-actions
         continue-on-error: true
 
@@ -714,6 +754,15 @@ jobs:
         with:
           path: cassettes
           key: ${{ env.NETWORK_CACHE_PREFIX }}-${{ needs.year-week.outputs.date }}-${{ hashFiles('tests') }}-${{ github.job }}
+      - name: Set coveralls path mapping
+        run: |
+          echo "
+
+          [tool.coverage.paths]
+          source = [
+              \"renku/\",
+              \"$(python -c 'import sysconfig; print(sysconfig.get_paths()["purelib"])')/renku/\"
+          ]" >> pyproject.toml
       - name: Test with pytest
         env:
           POETRY_VIRTUALENVS_CREATE: false
@@ -742,6 +791,7 @@ jobs:
           GITHUB_TOKEN: $COVERALLS_REPO_TOKEN
           RENKU_REQUESTS_TIMEOUT_SECONDS: 120
           COVERALLS_PARALLEL: true
+        if: always()
         run: coveralls --service=github-actions
         continue-on-error: true
 
@@ -793,6 +843,15 @@ jobs:
         with:
           path: cassettes
           key: ${{ env.NETWORK_CACHE_PREFIX }}-${{ needs.year-week.outputs.date }}-${{ hashFiles('tests') }}-${{ github.job }}
+      - name: Set coveralls path mapping
+        run: |
+          echo "
+
+          [tool.coverage.paths]
+          source = [
+              \"renku/\",
+              \"$(python -c 'import sysconfig; print(sysconfig.get_paths()["purelib"])')/renku/\"
+          ]" >> pyproject.toml
       - name: Test with pytest
         env:
           POETRY_VIRTUALENVS_CREATE: false
@@ -821,6 +880,7 @@ jobs:
           GITHUB_TOKEN: $COVERALLS_REPO_TOKEN
           RENKU_REQUESTS_TIMEOUT_SECONDS: 120
           COVERALLS_PARALLEL: true
+        if: always()
         run: coveralls --service=github-actions
         continue-on-error: true
 
@@ -1004,6 +1064,7 @@ jobs:
         test-linux-integration,
         test-linux-integration-service,
       ]
+    if: always()
     runs-on: ubuntu-latest
     permissions:
       contents: read

poetry.lock

@@ -62,7 +62,7 @@ circus = { version = "==0.17.1", optional = true }
 click = ">=8.0,<8.1.3"
 click-option-group = "<0.6.0,>=0.5.2"
 click-plugins = "==1.1.1"
-coverage = { version = "<6.4,>=4.5.3", optional = true }
+coverage = { version = "<6.4,>=4.5.3", extras=["toml"], optional = true }
 cryptography = "<37.0.0,>=3.4.1"
 cwl-utils = ">=0.12"
 cwltool = "==3.1.20211107152837"
@@ -318,7 +318,7 @@ pattern = """
 files = ["renku/version.py"]
 
 [tool.pytest.ini_options]
-addopts = "--flake8 --black --doctest-glob=\"*.rst\" --doctest-modules --cov=renku --cov-config .coveragerc --cov-report=term-missing --ignore=docs/cheatsheet/"
+addopts = "--flake8 --black --doctest-glob=\"*.rst\" --doctest-modules --cov=renku --cov-report=term-missing --ignore=docs/cheatsheet/"
 doctest_optionflags = "ALLOW_UNICODE"
 flake8-ignore = ["*.py", "E121", "E126", "E203", "E226", "E231", "W503", "W504", "docs/conf.py", "docs/cheatsheet/conf.py", "ALL"]
 flake8-max-line-length = 120