add a docker image

Author: sofyalaski

.github/workflows/ci.yml

@@ -5,9 +5,7 @@ name: Build Depositor
 
 on:
   push:
-    branches:
-      - main
-      - *-release
+    branches: [ "main" ]
   pull_request:
     branches: [ "main" ]
 
@@ -19,7 +17,7 @@ jobs:
       - uses: actions/[email protected]
       - uses: actions/setup-go@v2
         with:
-          go-version: '1.21'
+          go-version: '1.22.6'
       - name: generate
         run: go generate ./...
       - name: golangci-lint
@@ -40,5 +38,6 @@ jobs:
     - name: Build
       run: go build -v ./...
 
+      # need to add tests
     - name: Test
       run: go test -v ./...

.github/workflows/release.yaml

@@ -5,12 +5,15 @@ on:
     tags:
       - "v*"
 
-permissions:
-  contents: write
+env:
+  REGISTRY: ghcr.io
+  IMAGE_NAME: ${{ github.repository }}
 
 jobs:
   goreleaser:
     runs-on: ubuntu-latest
+    permissions:
+      contents: write
     steps:
       - name: Checkout
         uses: actions/checkout@v4
@@ -28,4 +31,45 @@ jobs:
           version: latest
           args: release --clean
         env:
-          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+  build-and-push-docker-image:
+    runs-on: ubuntu-latest
+    permissions:
+      contents: read
+      packages: write
+      attestations: write
+      id-token: write
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v4
+
+      - name: Log in to the Container registry
+        uses: docker/login-action@v3
+        with:
+          registry: ${{ env.REGISTRY }}
+          username: ${{ github.actor }}
+          password: ${{ secrets.GITHUB_TOKEN }}
+
+      - name: Extract metadata (tags, labels) for Docker
+        id: meta
+        uses: docker/metadata-action@v5
+        with:
+          images: ${{ env.REGISTRY }}/${{ env.IMAGE_NAME }}
+      - name: Build and push Docker image
+        id: push
+        uses: docker/build-push-action@v6
+        with:
+          context: .
+          push: true
+          platforms: linux/amd64,linux/arm64
+          build-args: |
+            VERSION=${{ steps.meta.outputs.tags }}
+          tags: ${{ steps.meta.outputs.tags }}
+          labels: ${{ steps.meta.outputs.labels }}
+      - name: Generate artifact attestation
+        uses: actions/attest-build-provenance@v2
+        with:
+          subject-name: ${{ env.REGISTRY }}/${{ env.IMAGE_NAME}}
+          subject-digest: ${{ steps.push.outputs.digest }}
+          push-to-registry: true
+      

Dockerfile

@@ -11,31 +11,32 @@ COPY go.mod go.sum ./
 RUN go mod download
 
 # Copy the source code
-COPY ./depositions/onedep ./depositions/onedep
-COPY ./conversions.csv /app/conversions.csv
+COPY main.go ./
+COPY conversions.csv /app/conversions.csv
+COPY mmcif_pdbx_v50.dic /app/mmcif_pdbx_v50.dic
+COPY depositions/onedep ./depositions/onedep
+COPY docs ./docs
 
-# Build
-RUN CGO_ENABLED=0 GOOS=linux GOARCH=amd64 go generate ./depositions/onedep
-RUN CGO_ENABLED=0 GOOS=linux GOARCH=amd64 go build -o /app/depositor ./depositions/onedep
+ARG VERSION=v.0.1.0
+
+# Build GOARCH=amd64
+RUN CGO_ENABLED=0 GOOS=linux  GOARCH=${TARGETARCH} go generate .
+RUN CGO_ENABLED=0 GOOS=linux  GOARCH=${TARGETARCH} go build -o /app/depositor
 
 # Final stage
 FROM alpine:latest
 
-# Install necessary packages
-RUN apk add --no-cache ca-certificates
-
 # Set environment variables
-ENV PORT=8080
+ENV PORT=8888
 ENV ALLOW_ORIGINS=http://localhost:4200
 
-# Copy the binary from the builder stage
+# Copy the binary and other necessary files from the builder stage
 COPY --from=builder /app/depositor /app/depositor
 COPY --from=builder /app/conversions.csv /app/conversions.csv
+COPY --from=builder /app/mmcif_pdbx_v50.dic /app/mmcif_pdbx_v50.dic
 
-# Set executable permission for the depositor binary
-RUN chmod +x /app/depositor
 
-EXPOSE 8080
+EXPOSE 8888
 # Run
 WORKDIR /app
 CMD ["./depositor"]

docker-compose.yaml

@@ -24,8 +24,8 @@ import (
 //	@description	Rest API for communication between SciCat frontend and depositor backend. Backend service enables deposition of datasets to OneDep API.
 
 var version string = "DEV"
-var PORT string = getEnv("PORT", "8080")
-var ALLOW_ORIGINS string = getEnv("ALLOW_ORIGINS", "http://localhost:4202")
+var PORT string = getEnv("PORT", "8888")
+var ALLOW_ORIGINS string = getEnv("ALLOW_ORIGINS", "http://localhost:4200")
 
 func getEnv(key, defaultValue string) string {
 	if value, exists := os.LookupEnv(key); exists {
@@ -677,7 +677,7 @@ func GetVersion(c *gin.Context) {
 	c.JSON(http.StatusOK, gin.H{"version": version})
 }
 func main() {
-
+	fmt.Println(ALLOW_ORIGINS, PORT)
 	router := gin.Default()
 	router.Use(cors.New(cors.Config{
 		AllowOrigins: []string{ALLOW_ORIGINS},
@@ -697,5 +697,5 @@ func main() {
 	router.POST("/onedep/metadata", DownloadMetadata)
 	router.POST("/onedep/pdb", DownloadCoordinatesWithMetadata)
 
-	router.Run("localhost:" + PORT)
+	router.Run(":" + PORT)
 }