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Merge pull request #41 from SynBioDex/sbol3update
Sbol3update
2 parents 2b293de + ed7810d commit dd2bf9b

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‎SBOL3/BBa_F2620_PoPSReceiver/BBa_F2620_PoPSReceiver.jsonld‎

Lines changed: 703 additions & 439 deletions
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‎SBOL3/BBa_F2620_PoPSReceiver/BBa_F2620_PoPSReceiver.jsonld_expanded‎

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Original file line numberDiff line numberDiff line change
@@ -144,7 +144,7 @@
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"@id" : "https://synbiohub.org/public/igem/BBa_B0015_Sequence1"
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} ],
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"http://sbols.org/v3#end" : [ {
147-
"@value" : "79"
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"@value" : "80"
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} ],
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"http://sbols.org/v3#displayId" : [ {
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"@value" : "Range1"
@@ -291,7 +291,7 @@
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"@value" : "BBa_C0062_Sequence1"
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} ],
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"http://sbols.org/v3#description" : [ {
294-
"@value" : "luxR sequence"
294+
"@value" : "BBa_C0062 sequence"
295295
} ],
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"@type" : [ "http://sbols.org/v3#Sequence" ]
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}, {
@@ -336,7 +336,7 @@
336336
"@value" : "BBa_C0062_protein_Sequence1"
337337
} ],
338338
"http://sbols.org/v3#description" : [ {
339-
"@value" : "LuxR sequence"
339+
"@value" : "BBa_C0062_protein sequence"
340340
} ],
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"@type" : [ "http://sbols.org/v3#Sequence" ]
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}, {
@@ -544,7 +544,7 @@
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"@id" : "https://synbiohub.org/public/igem/BBa_F2620_Sequence1"
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} ],
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"http://sbols.org/v3#end" : [ {
547-
"@value" : "53"
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"@value" : "54"
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} ],
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"http://sbols.org/v3#displayId" : [ {
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"@value" : "Range1"
@@ -745,7 +745,7 @@
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"@value" : "BBa_R0040_Sequence1"
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} ],
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"http://sbols.org/v3#description" : [ {
748-
"@value" : "pTetR sequence"
748+
"@value" : "BBa_R0040 sequence"
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} ],
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"@type" : [ "http://sbols.org/v3#Sequence" ]
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}, {
@@ -790,7 +790,7 @@
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"@value" : "BBa_R0062_Sequence1"
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} ],
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"http://sbols.org/v3#description" : [ {
793-
"@value" : "lux pR sequence"
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"@value" : "BBa_R0062 sequence"
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} ],
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"@type" : [ "http://sbols.org/v3#Sequence" ]
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}, {
@@ -835,7 +835,7 @@
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"@value" : "TetR_protein_Sequence1"
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} ],
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"http://sbols.org/v3#description" : [ {
838-
"@value" : "TetR sequence"
838+
"@value" : "TetR_protein sequence"
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} ],
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"@type" : [ "http://sbols.org/v3#Sequence" ]
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} ]

‎SBOL3/BBa_F2620_PoPSReceiver/BBa_F2620_PoPSReceiver.nt‎

Lines changed: 7 additions & 7 deletions
Original file line numberDiff line numberDiff line change
@@ -1,7 +1,7 @@
11
<https://synbiohub.org/public/igem/BBa_F2620/SubComponent3/Range1> <http://sbols.org/v3#start> "1" .
22
<https://synbiohub.org/public/igem/BBa_F2620/SubComponent3/Range1> <http://sbols.org/v3#orientation> <https://identifiers.org/SO:0001030> .
33
<https://synbiohub.org/public/igem/BBa_F2620/SubComponent3/Range1> <http://sbols.org/v3#hasSequence> <https://synbiohub.org/public/igem/BBa_F2620_Sequence1> .
4-
<https://synbiohub.org/public/igem/BBa_F2620/SubComponent3/Range1> <http://sbols.org/v3#end> "53" .
4+
<https://synbiohub.org/public/igem/BBa_F2620/SubComponent3/Range1> <http://sbols.org/v3#end> "54" .
55
<https://synbiohub.org/public/igem/BBa_F2620/SubComponent3/Range1> <http://sbols.org/v3#displayId> "Range1" .
66
<https://synbiohub.org/public/igem/BBa_F2620/SubComponent3/Range1> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Range> .
77
<https://synbiohub.org/public/igem/BBa_F2620/SubComponent5> <http://sbols.org/v3#orientation> <https://identifiers.org/SO:0001030> .
@@ -14,7 +14,7 @@
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<https://synbiohub.org/public/igem/BBa_C0062_Sequence1> <http://sbols.org/v3#encoding> <https://identifiers.org/edam:format_1207> .
1515
<https://synbiohub.org/public/igem/BBa_C0062_Sequence1> <http://sbols.org/v3#elements> "atgaaaaacataaatgccgacgacacatacagaataattaataaaattaaagcttgtagaagcaataatgatattaatcaatgcttatctgatatgactaaaatggtacattgtgaatattatttactcgcgatcatttatcctcattctatggttaaatctgatatttcaatcctagataattaccctaaaaaatggaggcaatattatgatgacgctaatttaataaaatatgatcctatagtagattattctaactccaatcattcaccaattaattggaatatatttgaaaacaatgctgtaaataaaaaatctccaaatgtaattaaagaagcgaaaacatcaggtcttatcactgggtttagtttccctattcatacggctaacaatggcttcggaatgcttagttttgcacattcagaaaaagacaactatatagatagtttatttttacatgcgtgtatgaacataccattaattgttccttctctagttgataattatcgaaaaataaatatagcaaataataaatcaaacaacgatttaaccaaaagagaaaaagaatgtttagcgtgggcatgcgaaggaaaaagctcttgggatatttcaaaaatattaggttgcagtgagcgtactgtcactttccatttaaccaatgcgcaaatgaaactcaatacaacaaaccgctgccaaagtatttctaaagcaattttaacaggagcaattgattgcccatactttaaaaattaataacactgatagtgctagtgtagatcac" .
1616
<https://synbiohub.org/public/igem/BBa_C0062_Sequence1> <http://sbols.org/v3#displayId> "BBa_C0062_Sequence1" .
17-
<https://synbiohub.org/public/igem/BBa_C0062_Sequence1> <http://sbols.org/v3#description> "luxR sequence" .
17+
<https://synbiohub.org/public/igem/BBa_C0062_Sequence1> <http://sbols.org/v3#description> "BBa_C0062 sequence" .
1818
<https://synbiohub.org/public/igem/BBa_C0062_Sequence1> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Sequence> .
1919
<https://synbiohub.org/public/igem/BBa_B0010_Sequence1> <http://sbols.org/v3#name> "Sequence1" .
2020
<https://synbiohub.org/public/igem/BBa_B0010_Sequence1> <http://sbols.org/v3#hasNamespace> <https://synbiohub.org/public/igem> .
@@ -112,7 +112,7 @@
112112
<https://synbiohub.org/public/igem/TetR_protein_Sequence1> <http://sbols.org/v3#encoding> <https://identifiers.org/edam:format_1208> .
113113
<https://synbiohub.org/public/igem/TetR_protein_Sequence1> <http://sbols.org/v3#elements> "NNNNNNNNNNN" .
114114
<https://synbiohub.org/public/igem/TetR_protein_Sequence1> <http://sbols.org/v3#displayId> "TetR_protein_Sequence1" .
115-
<https://synbiohub.org/public/igem/TetR_protein_Sequence1> <http://sbols.org/v3#description> "TetR sequence" .
115+
<https://synbiohub.org/public/igem/TetR_protein_Sequence1> <http://sbols.org/v3#description> "TetR_protein sequence" .
116116
<https://synbiohub.org/public/igem/TetR_protein_Sequence1> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Sequence> .
117117
<https://synbiohub.org/public/igem/BBa_B0015/SubComponent2> <http://sbols.org/v3#orientation> <https://identifiers.org/SO:0001030> .
118118
<https://synbiohub.org/public/igem/BBa_B0015/SubComponent2> <http://sbols.org/v3#instanceOf> <https://synbiohub.org/public/igem/BBa_B0012> .
@@ -156,7 +156,7 @@
156156
<https://synbiohub.org/public/igem/BBa_B0015/SubComponent1/Range1> <http://sbols.org/v3#start> "1" .
157157
<https://synbiohub.org/public/igem/BBa_B0015/SubComponent1/Range1> <http://sbols.org/v3#orientation> <https://identifiers.org/SO:0001030> .
158158
<https://synbiohub.org/public/igem/BBa_B0015/SubComponent1/Range1> <http://sbols.org/v3#hasSequence> <https://synbiohub.org/public/igem/BBa_B0015_Sequence1> .
159-
<https://synbiohub.org/public/igem/BBa_B0015/SubComponent1/Range1> <http://sbols.org/v3#end> "79" .
159+
<https://synbiohub.org/public/igem/BBa_B0015/SubComponent1/Range1> <http://sbols.org/v3#end> "80" .
160160
<https://synbiohub.org/public/igem/BBa_B0015/SubComponent1/Range1> <http://sbols.org/v3#displayId> "Range1" .
161161
<https://synbiohub.org/public/igem/BBa_B0015/SubComponent1/Range1> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Range> .
162162
<https://synbiohub.org/public/igem/BBa_F2620/Interaction3/Participation1> <http://sbols.org/v3#role> <https://identifiers.org/SBO:0000643> .
@@ -178,7 +178,7 @@
178178
<https://synbiohub.org/public/igem/BBa_R0062_Sequence1> <http://sbols.org/v3#encoding> <https://identifiers.org/edam:format_1207> .
179179
<https://synbiohub.org/public/igem/BBa_R0062_Sequence1> <http://sbols.org/v3#elements> "acctgtaggatcgtacaggtttacgcaagaaaatggtttgttatagtcgaataaa" .
180180
<https://synbiohub.org/public/igem/BBa_R0062_Sequence1> <http://sbols.org/v3#displayId> "BBa_R0062_Sequence1" .
181-
<https://synbiohub.org/public/igem/BBa_R0062_Sequence1> <http://sbols.org/v3#description> "lux pR sequence" .
181+
<https://synbiohub.org/public/igem/BBa_R0062_Sequence1> <http://sbols.org/v3#description> "BBa_R0062 sequence" .
182182
<https://synbiohub.org/public/igem/BBa_R0062_Sequence1> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Sequence> .
183183
<https://synbiohub.org/public/igem/BBa_B0015/SubComponent1> <http://sbols.org/v3#orientation> <https://identifiers.org/SO:0001030> .
184184
<https://synbiohub.org/public/igem/BBa_B0015/SubComponent1> <http://sbols.org/v3#instanceOf> <https://synbiohub.org/public/igem/BBa_B0010> .
@@ -222,7 +222,7 @@
222222
<https://synbiohub.org/public/igem/BBa_C0062_protein_Sequence1> <http://sbols.org/v3#encoding> <https://identifiers.org/edam:format_1208> .
223223
<https://synbiohub.org/public/igem/BBa_C0062_protein_Sequence1> <http://sbols.org/v3#elements> "NNNNNNNNNNN" .
224224
<https://synbiohub.org/public/igem/BBa_C0062_protein_Sequence1> <http://sbols.org/v3#displayId> "BBa_C0062_protein_Sequence1" .
225-
<https://synbiohub.org/public/igem/BBa_C0062_protein_Sequence1> <http://sbols.org/v3#description> "LuxR sequence" .
225+
<https://synbiohub.org/public/igem/BBa_C0062_protein_Sequence1> <http://sbols.org/v3#description> "BBa_C0062_protein sequence" .
226226
<https://synbiohub.org/public/igem/BBa_C0062_protein_Sequence1> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Sequence> .
227227
<https://synbiohub.org/public/igem/BBa_F2620/Interaction3> <http://sbols.org/v3#type> <https://identifiers.org/SBO:0000170> .
228228
<https://synbiohub.org/public/igem/BBa_F2620/Interaction3> <http://sbols.org/v3#hasParticipation> <https://synbiohub.org/public/igem/BBa_F2620/Interaction3/Participation1> .
@@ -267,7 +267,7 @@
267267
<https://synbiohub.org/public/igem/BBa_R0040_Sequence1> <http://sbols.org/v3#encoding> <https://identifiers.org/edam:format_1207> .
268268
<https://synbiohub.org/public/igem/BBa_R0040_Sequence1> <http://sbols.org/v3#elements> "tccctatcagtgatagagattgacatccctatcagtgatagagatactgagcac" .
269269
<https://synbiohub.org/public/igem/BBa_R0040_Sequence1> <http://sbols.org/v3#displayId> "BBa_R0040_Sequence1" .
270-
<https://synbiohub.org/public/igem/BBa_R0040_Sequence1> <http://sbols.org/v3#description> "pTetR sequence" .
270+
<https://synbiohub.org/public/igem/BBa_R0040_Sequence1> <http://sbols.org/v3#description> "BBa_R0040 sequence" .
271271
<https://synbiohub.org/public/igem/BBa_R0040_Sequence1> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://sbols.org/v3#Sequence> .
272272
<https://synbiohub.org/public/igem/BBa_F2620/Interaction2> <http://sbols.org/v3#type> <https://identifiers.org/SBO:0000170> .
273273
<https://synbiohub.org/public/igem/BBa_F2620/Interaction2> <http://sbols.org/v3#hasParticipation> <https://synbiohub.org/public/igem/BBa_F2620/Interaction2/Participation1> .

‎SBOL3/BBa_F2620_PoPSReceiver/BBa_F2620_PoPSReceiver.rdf‎

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<sbol:hasSequence>
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<sbol:Sequence rdf:about="BBa_F2620_Sequence1"/>
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</sbol:hasSequence>
164-
<sbol:end>53</sbol:end>
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<sbol:end>54</sbol:end>
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<sbol:displayId>Range1</sbol:displayId>
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</sbol:Range>
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</sbol:hasLocation>
@@ -300,7 +300,7 @@
300300
<sbol:hasSequence>
301301
<sbol:Sequence rdf:about="BBa_B0015_Sequence1"/>
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</sbol:hasSequence>
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<sbol:end>79</sbol:end>
303+
<sbol:end>80</sbol:end>
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<sbol:displayId>Range1</sbol:displayId>
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</sbol:Range>
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</sbol:hasLocation>
@@ -346,7 +346,7 @@
346346
<sbol:encoding rdf:resource="https://identifiers.org/edam:format_1207"/>
347347
<sbol:elements>acctgtaggatcgtacaggtttacgcaagaaaatggtttgttatagtcgaataaa</sbol:elements>
348348
<sbol:displayId>BBa_R0062_Sequence1</sbol:displayId>
349-
<sbol:description>lux pR sequence</sbol:description>
349+
<sbol:description>BBa_R0062 sequence</sbol:description>
350350
</sbol:Sequence>
351351
<sbol:Sequence rdf:about="BBa_B0034_Sequence1">
352352
<sbol:name>Sequence1</sbol:name>
@@ -370,7 +370,7 @@
370370
<sbol:encoding rdf:resource="https://identifiers.org/edam:format_1208"/>
371371
<sbol:elements>NNNNNNNNNNN</sbol:elements>
372372
<sbol:displayId>TetR_protein_Sequence1</sbol:displayId>
373-
<sbol:description>TetR sequence</sbol:description>
373+
<sbol:description>TetR_protein sequence</sbol:description>
374374
</sbol:Sequence>
375375
<sbol:Sequence rdf:about="BBa_B0012_Sequence1">
376376
<sbol:name>Sequence1</sbol:name>
@@ -386,22 +386,22 @@
386386
<sbol:encoding rdf:resource="https://identifiers.org/edam:format_1208"/>
387387
<sbol:elements>NNNNNNNNNNN</sbol:elements>
388388
<sbol:displayId>BBa_C0062_protein_Sequence1</sbol:displayId>
389-
<sbol:description>LuxR sequence</sbol:description>
389+
<sbol:description>BBa_C0062_protein sequence</sbol:description>
390390
</sbol:Sequence>
391391
<sbol:Sequence rdf:about="BBa_R0040_Sequence1">
392392
<sbol:name>Sequence1</sbol:name>
393393
<sbol:hasNamespace rdf:resource="../igem"/>
394394
<sbol:encoding rdf:resource="https://identifiers.org/edam:format_1207"/>
395395
<sbol:elements>tccctatcagtgatagagattgacatccctatcagtgatagagatactgagcac</sbol:elements>
396396
<sbol:displayId>BBa_R0040_Sequence1</sbol:displayId>
397-
<sbol:description>pTetR sequence</sbol:description>
397+
<sbol:description>BBa_R0040 sequence</sbol:description>
398398
</sbol:Sequence>
399399
<sbol:Sequence rdf:about="BBa_C0062_Sequence1">
400400
<sbol:name>Sequence1</sbol:name>
401401
<sbol:hasNamespace rdf:resource="../igem"/>
402402
<sbol:encoding rdf:resource="https://identifiers.org/edam:format_1207"/>
403403
<sbol:elements>atgaaaaacataaatgccgacgacacatacagaataattaataaaattaaagcttgtagaagcaataatgatattaatcaatgcttatctgatatgactaaaatggtacattgtgaatattatttactcgcgatcatttatcctcattctatggttaaatctgatatttcaatcctagataattaccctaaaaaatggaggcaatattatgatgacgctaatttaataaaatatgatcctatagtagattattctaactccaatcattcaccaattaattggaatatatttgaaaacaatgctgtaaataaaaaatctccaaatgtaattaaagaagcgaaaacatcaggtcttatcactgggtttagtttccctattcatacggctaacaatggcttcggaatgcttagttttgcacattcagaaaaagacaactatatagatagtttatttttacatgcgtgtatgaacataccattaattgttccttctctagttgataattatcgaaaaataaatatagcaaataataaatcaaacaacgatttaaccaaaagagaaaaagaatgtttagcgtgggcatgcgaaggaaaaagctcttgggatatttcaaaaatattaggttgcagtgagcgtactgtcactttccatttaaccaatgcgcaaatgaaactcaatacaacaaaccgctgccaaagtatttctaaagcaattttaacaggagcaattgattgcccatactttaaaaattaataacactgatagtgctagtgtagatcac</sbol:elements>
404404
<sbol:displayId>BBa_C0062_Sequence1</sbol:displayId>
405-
<sbol:description>luxR sequence</sbol:description>
405+
<sbol:description>BBa_C0062 sequence</sbol:description>
406406
</sbol:Sequence>
407407
</rdf:RDF>

‎SBOL3/BBa_F2620_PoPSReceiver/BBa_F2620_PoPSReceiver.rj‎

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Original file line numberDiff line numberDiff line change
@@ -140,7 +140,7 @@
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] ,
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"http://sbols.org/v3#description" : [ {
142142
"type" : "literal" ,
143-
"value" : "lux pR sequence"
143+
"value" : "BBa_R0062 sequence"
144144
}
145145
]
146146
}
@@ -442,7 +442,7 @@
442442
] ,
443443
"http://sbols.org/v3#description" : [ {
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"type" : "literal" ,
445-
"value" : "TetR sequence"
445+
"value" : "TetR_protein sequence"
446446
}
447447
]
448448
}
@@ -518,7 +518,7 @@
518518
] ,
519519
"http://sbols.org/v3#description" : [ {
520520
"type" : "literal" ,
521-
"value" : "LuxR sequence"
521+
"value" : "BBa_C0062_protein sequence"
522522
}
523523
]
524524
}
@@ -579,7 +579,7 @@
579579
] ,
580580
"http://sbols.org/v3#description" : [ {
581581
"type" : "literal" ,
582-
"value" : "luxR sequence"
582+
"value" : "BBa_C0062 sequence"
583583
}
584584
]
585585
}
@@ -1264,7 +1264,7 @@
12641264
] ,
12651265
"http://sbols.org/v3#end" : [ {
12661266
"type" : "literal" ,
1267-
"value" : "53"
1267+
"value" : "54"
12681268
}
12691269
]
12701270
}
@@ -1353,7 +1353,7 @@
13531353
] ,
13541354
"http://sbols.org/v3#end" : [ {
13551355
"type" : "literal" ,
1356-
"value" : "79"
1356+
"value" : "80"
13571357
}
13581358
]
13591359
}
@@ -1471,7 +1471,7 @@
14711471
] ,
14721472
"http://sbols.org/v3#description" : [ {
14731473
"type" : "literal" ,
1474-
"value" : "pTetR sequence"
1474+
"value" : "BBa_R0040 sequence"
14751475
}
14761476
]
14771477
}

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