diff --git a/README.md b/README.md index 5a99251..504c3db 100644 --- a/README.md +++ b/README.md @@ -7,7 +7,7 @@ The base configuration, described with `docker-compose.yml`, is simply SynBioHub To run the base configuration: 1. Open terminal -2. `git clone https://github.com/synbiohub/synbiohub2-docker` +2. `git clone -b snapshot https://github.com/synbiohub/synbiohub2-docker` 3. `docker-compose -f ./synbiohub2-docker/docker-compose.yml up` ### With Explorer diff --git a/docker-compose.explorer.yml b/docker-compose.explorer.yml index 22dd968..06b7aeb 100644 --- a/docker-compose.explorer.yml +++ b/docker-compose.explorer.yml @@ -3,11 +3,13 @@ version: '3.2' services: explorer: image: myersresearchgroup/sbolexplorer:snapshot-synbiohub + privileged: true ports: - "13162:13162" depends_on: - elasticsearch - - synbiohub3 + - synbiohub + - synbiohubFrontend dns: 8.8.8.8 volumes: - type: volume @@ -15,10 +17,14 @@ services: target: /mnt elasticsearch: image: docker.elastic.co/elasticsearch/elasticsearch:6.3.2 + depends_on: + - virtuoso ports: - "9200:9200" volumes: - - esdata:/usr/share/elasticsearch/data + - type: volume + source: esdata + target: /usr/share/elasticsearch/data volumes: esdata: diff --git a/docker-compose.yml b/docker-compose.yml index 8de2f6d..461406d 100644 --- a/docker-compose.yml +++ b/docker-compose.yml @@ -9,12 +9,12 @@ services: volumes: - /var/run/docker.sock:/var/run/docker.sock virtuoso: - image: tenforce/virtuoso:virtuoso7.2.5 + image: askomics/virtuoso:7.2.14 environment: - VIRT_SPARQL_MaxQueryCostEstimationTime=default - VIRT_SPARQL_MaxQueryExecutionTime=300 - - VIRT_Parameters_ServerThreads=30 - - VIRT_HTTPServer_ServerThreads=300 + - VIRT_Parameters_ServerThreads=100 + - VIRT_HTTPServer_ServerThreads=100 volumes: - type: volume source: virtuoso-db1 @@ -34,7 +34,7 @@ services: - backend=http://localhost:7777 - backendSS=http://synbiohub:7777 synbiohub: - image: synbiohub/synbiohub:1.6.1-standalone + image: synbiohub/synbiohub:snapshot-standalone depends_on: - virtuoso ports: