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feat: scaleBioMass reports final output
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code/otherChanges/scaleBioMass.m

Lines changed: 3 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -28,20 +28,21 @@
2828
end
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%Measure current composition and rescale:
31-
[~,P,C,R,D,L,I,F] = sumBioMass(model,dispOutput);
31+
[~,P,C,R,D,L,I,F] = sumBioMass(model,false);
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content_all = {'carbohydrate','protein','lipid','RNA','DNA','ion','cofactor'};
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content_Cap = {'C','P','L','R','D','I','F'};
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pos = strcmp(content_all,component);
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old_value = eval(content_Cap{pos});
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f = new_value / old_value;
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model = rescalePseudoReaction(model,component,f);
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X = sumBioMass(model,false);
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%Balance out (if desired):
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if ~isempty(balance_out)
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X = sumBioMass(model,false);
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pos = strcmp(content_all,balance_out);
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balance_value = eval(content_Cap{pos});
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f = (balance_value + (1-X)) / balance_value;
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model = rescalePseudoReaction(model,balance_out,f);
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end
47+
sumBioMass(model,dispOutput);
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end

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