removed built-in pyparsing and added to requirements

Author: bgoli

build/lib/cbmpy/CBCPLEX.py

@@ -0,0 +1,83 @@
+"""
+CBMPy: CBConfig module
+======================
+PySCeS Constraint Based Modelling (http://cbmpy.sourceforge.net)
+Copyright (C) 2009-2022 Brett G. Olivier, VU University Amsterdam, Amsterdam, The Netherlands
+
+This program is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with this program.  If not, see <http://www.gnu.org/licenses/>
+
+Author: Brett G. Olivier
+Contact email: [email protected]
+Last edit: $Author: bgoli $ ($Id: CBConfig.py 711 2020-04-27 14:22:34Z bgoli $)
+
+"""
+# gets rid of "invalid variable name" info
+# pylint: disable=C0103
+# gets rid of "line to long" info
+# pylint: disable=C0301
+# use with caution: gets rid of module xxx has no member errors (run once enabled)
+# pylint: disable=E1101
+
+# preparing for Python 3 port
+from __future__ import division, print_function
+from __future__ import absolute_import
+
+# from __future__ import unicode_literals
+
+import platform
+
+__VERSION_MAJOR__ = 0
+__VERSION_MINOR__ = 8
+__VERSION_MICRO__ = 4
+
+__CBCONFIG__ = {
+    'VERSION_MAJOR': __VERSION_MAJOR__,
+    'VERSION_MINOR': __VERSION_MINOR__,
+    'VERSION_MICRO': __VERSION_MICRO__,
+    'VERSION_STATUS': '',
+    'VERSION': '{}.{}.{}'.format(
+        __VERSION_MAJOR__, __VERSION_MINOR__, __VERSION_MICRO__
+    ),
+    'DEBUG': False,
+    'SOLVER_PREF': 'CPLEX',
+    #'SOLVER_PREF': 'GLPK',
+    'SOLVER_ACTIVE': None,
+    'REVERSIBLE_SYMBOL': '<==>',
+    'IRREVERSIBLE_SYMBOL': '-->',
+    'HAVE_SBML2': False,
+    'HAVE_SBML3': False,
+    'CBMPY_DIR': None,
+    'SYMPY_DENOM_LIMIT': 10 ** 32,
+    'ENVIRONMENT': '{} {} ({})'.format(
+        platform.system(), platform.release(), platform.architecture()[0]
+    ),
+    'MULTICORE_PYTHON_BIN_OVERRIDE': None,
+    
+}
+
+
+def current_version():
+    """
+    Return the current CBMPy version as a string
+
+    """
+    return '{}.{}.{}'.format(__VERSION_MAJOR__, __VERSION_MINOR__, __VERSION_MICRO__)
+
+
+def current_version_tuple():
+    """
+    Return the current CBMPy version as a tuple (x, y, z)
+
+    """
+    return (__VERSION_MAJOR__, __VERSION_MINOR__, __VERSION_MICRO__)

build/lib/cbmpy/CBCommon.py

@@ -0,0 +1,30 @@
+"""
+CBMPy: CBDataStruct module
+==========================
+PySCeS Constraint Based Modelling (http://cbmpy.sourceforge.net)
+Copyright (C) 2009-2022 Brett G. Olivier, VU University Amsterdam, Amsterdam, The Netherlands
+
+This program is free software: you can redistribute it and/or modify
+it under the terms of the GNU General Public License as published by
+the Free Software Foundation, either version 3 of the License, or
+(at your option) any later version.
+
+This program is distributed in the hope that it will be useful,
+but WITHOUT ANY WARRANTY; without even the implied warranty of
+MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+GNU General Public License for more details.
+
+You should have received a copy of the GNU General Public License
+along with this program.  If not, see <http://www.gnu.org/licenses/>
+
+Author: Brett G. Olivier
+Contact email: [email protected]
+Last edit: $Author: bgoli $ ($Id: CBDataStruct.py 710 2020-04-27 14:22:34Z bgoli $)
+
+"""
+
+# preparing for Python 3 port
+from __future__ import division, print_function
+from __future__ import absolute_import
+
+# from __future__ import unicode_literals