Bump version to 3.4.1

Author: bentsherman

docs/conf.py

@@ -35,7 +35,7 @@
 # The short X.Y version
 version = u''
 # The full version, including alpha/beta/rc tags
-release = u'v3.4.0'
+release = u'v3.4.1'
 
 
 # -- General configuration ---------------------------------------------------

docs/installation.rst

@@ -154,7 +154,7 @@ Select a suitable `version of KINC <https://github.com/SystemsGenetics/KINC/rele
 .. code:: bash
 
   export ACE_VERSION=v3.2.0
-  export KINC_VERSION=v3.4.0
+  export KINC_VERSION=v3.4.1
 
 Next, clone the KINC repository:
 
@@ -249,11 +249,11 @@ Once you have obtained an interactive node, run the following commands from your
   git clone https://github.com/bentsherman/pbs-toolkit.git
   ./pbs-toolkit/modules/install-ace.sh v3.2.0
   ./pbs-toolkit/modules/install-statslib.sh
-  ./pbs-toolkit/modules/install-kinc.sh v3.4.0 v3.2.0
+  ./pbs-toolkit/modules/install-kinc.sh v3.4.1 v3.2.0
 
 These scripts will install ACE and KINC into your home directory, establishing them as modules that can be run from anywhere. It will also update your environment so that the modules can be called when necessary. It uses a module called ``use.own``, which when added will make KINC and ACE available to be used interactively. You should now be able to load KINC as a module:
 
 .. code:: bash
 
   module add use.own
-  module add KINC/v3.4.0
+  module add KINC/v3.4.1

docs/usage.rst

@@ -78,7 +78,7 @@ You can retrieve a list of all of the functions that KINC provides by executing
 
   kinc help run
 
-The following will be shown for KINC v3.4.0:
+The following will be shown for KINC v3.4.1:
 
 .. code::
 
@@ -518,7 +518,7 @@ To use KINC in an interactive Docker container execute the following:
 
 .. code:: bash
 
-  nvidia-docker run --rm -it systemsgenetics/kinc:3.4.0 bash
+  nvidia-docker run --rm -it systemsgenetics/kinc:3.4.1 bash
 
 The command above will provide access to the terminal inside of the image where commands such as the following can be executed:
 
@@ -531,7 +531,7 @@ You will need to share the input and output data between the Docker container an
 
 .. code:: bash
 
-  nvidia-docker run --rm -it -v $PWD:/root systemsgenetics/kinc:3.4.0 bash
+  nvidia-docker run --rm -it -v $PWD:/root systemsgenetics/kinc:3.4.1 bash
   > ls
 
 Automating KINC with Nextflow

src/KINC.pri

@@ -2,7 +2,7 @@
 # Versions
 KINC_MAJOR_VERSION = 3
 KINC_MINOR_VERSION = 4
-KINC_REVISION = 0
+KINC_REVISION = 1
 
 VERSION = $${KINC_MAJOR_VERSION}.$${KINC_MINOR_VERSION}.$${KINC_REVISION}