Merge pull request #62 from TASBE/coverney.json

Updated tutorial JSON Header

Author: jakebeal

template_analysis/LacI-CAGop-batch.mat

@@ -48,6 +48,11 @@
 
 n_conditions = size(file_pairs,1);
 
+% Create point cloud files
+% TASBEConfig.set('flow.outputPointCloud','true');
+% TASBEConfig.set('flow.pointCloudPath','csv/');
+% TASBEConfig.set('flow.pointCloudFileType', 1);
+
 % Execute the actual analysis
 TASBEConfig.set('OutputSettings.StemName','LacI-CAGop');
 TASBEConfig.set('OutputSettings.FixedInputAxis',[1e4 1e10]);

template_analysis/batch_template.m

@@ -1,15 +1,22 @@
-[
-	3,
-	"FITC-A",
-	"PE-Tx-Red-YG-A",
-	"Pacific Blue-A",
-	"EYFP",
-	"mKate",
-	"EBFP2",
-	"ERF",
-	"ERF",
-	"ERF",
-	14,
+{
+	"channels": [
+		{
+			"name": "FITC-A",
+			"print_name": "EYFP",
+			"unit": "MEFL"
+		},
+		{
+			"name": "PE-Tx-Red-YG-A",
+			"print_name": "mKate",
+			"unit": "MEFL"
+		},
+		{
+			"name": "Pacific Blue-A",
+			"print_name": "EBFP2",
+			"unit": "MEFL"
+		}
+	],
+	"filenames": [
 	"csv\/LacI-CAGop_Dox01_PointCloud.csv",
 	"csv\/LacI-CAGop_Dox02_PointCloud.csv",
 	"csv\/LacI-CAGop_Dox05_PointCloud.csv",
@@ -24,4 +31,6 @@
 	"csv\/LacI-CAGop_Dox500_PointCloud.csv",
 	"csv\/LacI-CAGop_Dox1000_PointCloud.csv",
 	"csv\/LacI-CAGop_Dox2000_PointCloud.csv"
-]
+	]
+}
+